Detailed information on CNT30625164


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 6e-132

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30405509Daucus carotaBeta vulgaris27.9813.4379.63324forward
CNT30526207Daucus carotaPhaseolus vulgaris45.1645.4479.92523forward
CNT30631224Daucus carotaVigna unguiculata42.236078.32489forward
CNT30486017Daucus carotaOlea europaea47.0655.1180545forward
CNT30711417Daucus carotaGlycine max50.632.7478.33586forward
CNT3085597Daucus carotaVigna radiata44.5637.3979.26516forward
CNT30441716Daucus carotaAegilops tauschii7.9420.5484.7892forward
CNT3059858Daucus carotaArabidopsis lyrata26.653.7582.14308forward
CNT30597278Daucus carotaFraxinus excelsior36.182.9481.34418forward
CNT30217954Daucus carotaKalanchoe fedtschenkoi7.8625.2886.8191forward
CNT30621314Daucus carotaCajanus cajan30.5728.0779.38354forward
CNT3048728Daucus carotaCucumis sativus10.7932.8181.6125forward

Expression of CNT30625164

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MVQKVLKWSNACDQSLDEVTQYCQHSKSPILNLL*

>peptide 2 (33 aa)
MQLMFGCIINNSFSLTWLVCDDENPILRHNLLT*

>peptide 3 (42 aa)
MGLQGMLGLRIQLGLSLSPRNIVFPLILDCTSLVISCALQIP*

>peptide 4 (42 aa)
MTPVWNHGKAVSAGMSPSFPKISGAIAPAAPNMAKRPLMISP*

>peptide 5 (65 aa)
MDFSSFPNPRGLKNGPPGYAGSPDPARPFSKPKKYCFPIDPGLYQSCNLLCSANPMRAISRTKSV*

>peptide 6 (79 aa)
MNPPVPSGSESPKGSKPKSPGRLCGVEAALTTKETFWDEDCAGLAAKICLAASAEEVIDEDDSTGTVAISLVYRIKCWK*

Sequence

>CNT30625164
TCAAGTCTGTCATTTGAATGTGATACAGGGAGTTTCCTATATACGTTTTTGAAGTTGCTGCTATAATTATATTAGGTGTTGTGAAAATGCAGTTGATGTT
TGGTTGCATTATAAACAACTCCTTTTCCCTTACATGGCTAGTTTGTGATGACGAAAACCCTATCTTAAGACATAACTTACTGACATAGATTATTTAAATA
TTCTCAAATTCAAACTAAATAGACTTGTGGAAAATATGCCCGCGGTAGTTGGGCACACTTCCTAGTATGAGATAAAATTGACAAGGTGGTAAATTCACAA
TGTGGGTTTAAGTTCCAGAGTTCTAGTGGAACTTAAGGCTAGTCAAGACATTGTTGTTAACAGGATCAGCCAAATGGTCCAGAAGGTTTTGAAGTGGTCC
AACGCCTGTGACCAAAGCTTGGATGAAGTAACCCAATATTGCCAACATAGCAAGTCTCCCATTCTTAACCTCCTTTAACTTGAGCTCTTTCATGGATTTC
TCGTCTTTTCCGAATCCAAGAGGATTAAAAAATGGGCCTCCAGGGTATGCTGGGTCTCCGGATCCAGCTAGGCCTTTCTCTAAGCCCAAGAAATATTGTT
TTCCCATTGATCCTGGATTGTACCAGTCTTGTAATCTCCTGTGCTCTGCAAATCCCATGAGAGCCATTTCTAGGACAAAGAGTGTGTAGCCATCAGCCCA
GTAGTTGTAAGTTCCTGCTGGAGGAATGACTCCTGTTTGGAACCATGGCAAGGCTGTTTCAGCTGGAATGAGCCCAAGTTTTCCCAAAATCTCAGGGGCT
ATAGCTCCTGCTGCACCCAACATGGCAAAACGACCATTGATGATCTCTCCATAGGCTAGCCATTTGGGCTCGATGAATCCTCCGGTTCCTTCAGGGTCGG
AAAGTCCCAAGGGGTCAAAACCAAAGTCGCCTGGAAGGCTGTGTGGAGTGGAAGCAGCCTTGACAACGAAGGAAACTTTCTGGGATGAAGATTGTGCTGG
TCTTGCAGCAAAGATCTGCCTTGCAGCTTCCGCAGAAGAGGTGATAGATGAAGATGACAGCACTGGTACTGTAGCCATCTCACTTGTGTACCGTATCAAG
TGCTGGAAATAAGCTAGTGCTGGAAACAAATGAAATCAAGTGCTGCAAATAAGGGAAT