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Detailed information on CNT3045167


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Prunus dulcisOryza sativa32.0138.5781.42113forward
CNT30372056Prunus dulcisArabidopsis thaliana43.0624.7683.55152forward
CNT30379782Prunus dulcisManihot esculenta55.5230.9684.18196forward
CNT30405509Prunus dulcisBeta vulgaris36.265.3183.59128forward
CNT30303678Prunus dulcisTriticum aestivum51.5627.3380.77182forward
CNT30543412Prunus dulcisBrassica napus68.5644.980.58242forward
CNT30238557Prunus dulcisBrassica oleracea68.5636.8380.17242forward
CNT30442289Prunus dulcisAegilops tauschii51.5628.880.77182forward
CNT30313529Prunus dulcisCamelina sativa34.5632.7186.07122forward
CNT3060116Prunus dulcisArabidopsis lyrata35.9826.5781.89127forward
CNT3077678Prunus dulcisBrassica juncea68.5639.4880.17242forward
CNT30259602Prunus dulcisBrassica rapa68.5632.6680.58242forward
CNT30611481Prunus dulcisArabis alpina23.5110.1885.5483forward
CNT30597278Prunus dulcisFraxinus excelsior45.3331.7582.5160forward
CNT30475143Prunus dulcisSaccharum spontaneum53.8224.9380190forward
CNT30217954Prunus dulcisKalanchoe fedtschenkoi43.6342.7879.87154forward
CNT30649241Prunus dulcisRosa chinensis69.6921.6281.3246forward
CNT30214152Prunus dulcisHelianthus annuus23.5118.8285.5483forward
CNT30625265Prunus dulcisDaucus carota37.9615.0185.07134forward
CNT30687021Prunus dulcisTriticum urartu51.5637.2281.87182forward
CNT30340478Prunus dulcisEragrostis tef60.9125.4481.4215forward
CNT30479074Prunus dulcisArabidopsis halleri26.3516.1283.8793forward
CNT30595683Prunus dulcisOryza meridionalis34.289.3382.64121forward
CNT30573352Prunus dulcisVitis vinifera68.8437.2781.89243forward
CNT3055927Prunus dulcisAmborella trichopoda39.0931.8782.61138forward
CNT30118713Prunus dulcisCitrus clementina71.3941.8679.76252forward
CNT30115627Prunus dulcisOryza nivara34.287.0781.82121forward
CNT30557361Prunus dulcisPanicum hallii34.2821.9281.82121forward

Expression of CNT3045167

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MELELQVLQRLLIFAKSQRVEEGPTRVSWVP*

Sequence

>CNT3045167
CTCACATAATCTTACAATGAGATAGGAAGAAGAGAGAGGAGAGAGAGACCCAAAGGGTCATCATATTCCAAGCAAAGCAACCAAGATATATTGTACAAAT
CTCTGTCAATGGAACTTGAGCTTCAAGTCCTTCAAAGACTTCTCATCTTTGCCAAATCCCAGAGGGTTGAAGAGGGGCCCACCCGGGTAAGCTGGGTCCC
CTGAGCCACCCAAGTACTTCTCCAAGCCCAAAAAGTACTGCTTGCCCATGGACCCTGGATTGTACCAGTCCTGTAACCTCCTGTGCTCTGCAAAGCCCAT
GAGGGCTAGCTCAAAGACAAAGAGTGTATAGGGGTCAGCCCAGTAGTTGTAGG