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Detailed information on CNT30597278


BLAST search results

BLAST vs Swiss-Prot:
sp|P27522|CB13_SOLLC, E-value = 5e-91

BLAST vs NONCODE:
NONBRAT004778, E-value = 7e-15

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Fraxinus excelsiorArabidopsis thaliana78.3764.3378.23395forward
CNT30281438Fraxinus excelsiorChenopodium quinoa24.811.0285.6125forward
CNT30379782Fraxinus excelsiorManihot esculenta82.7465.8879.86417forward
CNT30405509Fraxinus excelsiorBeta vulgaris61.1112.7778.57308forward
CNT30526207Fraxinus excelsiorPhaseolus vulgaris84.3336.9280.47425forward
CNT30631224Fraxinus excelsiorVigna unguiculata84.3352.1579.29425forward
CNT30486017Fraxinus excelsiorOlea europaea79.1740.3491.73399forward
CNT30711423Fraxinus excelsiorGlycine max66.8734.0781.6337forward
CNT3045167Fraxinus excelsiorPrunus dulcis31.7545.3382.5160forward
CNT3085597Fraxinus excelsiorVigna radiata74.2127.180.75374forward
CNT30543418Fraxinus excelsiorBrassica napus81.3554.5277.8410forward
CNT30238557Fraxinus excelsiorBrassica oleracea81.9462.8677.48413forward
CNT30145816Fraxinus excelsiorMedicago truncatula71.0317.279.05358forward
CNT30311401Fraxinus excelsiorCamelina sativa68.8543.9877.52347forward
CNT3059858Fraxinus excelsiorArabidopsis lyrata24.421.4782.11123forward
CNT3081731Fraxinus excelsiorBrassica juncea62.947.3178.55317forward
CNT30264551Fraxinus excelsiorBrassica rapa81.3553.1877.56410forward
CNT30611481Fraxinus excelsiorArabis alpina49.0130.3179.35247forward
CNT30476581Fraxinus excelsiorSaccharum spontaneum31.5518.0779.87159forward
CNT30607765Fraxinus excelsiorGossypium raimondii27.7820.9382.14140forward
CNT30217954Fraxinus excelsiorKalanchoe fedtschenkoi24.2133.8982.79122forward
CNT30649241Fraxinus excelsiorRosa chinensis85.1237.777.62429forward
CNT30214152Fraxinus excelsiorHelianthus annuus57.1465.3180.9288forward
CNT30718929Fraxinus excelsiorMalus domestica golden26.5914.4481.34134forward
CNT30625164Fraxinus excelsiorDaucus carota82.9436.181.34418forward
CNT30340478Fraxinus excelsiorEragrostis tef31.5518.8279.87159forward
CNT30479074Fraxinus excelsiorArabidopsis halleri62.154.2578.91313forward
CNT30621314Fraxinus excelsiorCajanus cajan61.3124.581.55309forward
CNT30359247Fraxinus excelsiorLactuca sativa56.1533.6182.69283forward
CNT30573352Fraxinus excelsiorVitis vinifera45.2434.9782.02228forward
CNT3027741Fraxinus excelsiorTheobroma cacao45.4452.481.22229forward
CNT30118713Fraxinus excelsiorCitrus clementina70.6359.1480.9356forward
CNT30329767Fraxinus excelsiorDioscorea rotundata54.5644.9378.55275forward
CNT30725175Fraxinus excelsiorLupinus angustifolius40.2826.9680.3203forward

Expression of CNT30597278

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MPGHQTLPSLSPNPRSIACPWTLDWPSPGISGALQIPQVPFRKRIRCRNLPSSYMFRLEE*

>peptide 2 (70 aa)
FLHLQFLRGFLIFTEPQRVKKGATRVCRVTRPSQAFLQTQEVLLAHGPWIGPVLESPVLCKSHKCHFENE*

>peptide 3 (42 aa)
MTPVLNHGRAVSSGIRPAFPRISGAMAPTAPIIAVRPLKISP*

>peptide 4 (72 aa)
SFTFNSFVDFSSLPNPNGLKKGPPGYAGSPDPPKPFSKPKKYCLPMDPGLAQSWNLRCSANPTSAISKTNKV*

Sequence

>CNT30597278
TTCCTTCACCTTCAATTCCTTCGTGGATTTCTCATCTTTACCGAACCCCAACGGGTTAAAAAAGGGGCCACCAGGGTATGCCGGGTCACCAGACCCTCCC
AAGCCTTTCTCCAAACCCAAGAAGTATTGCTTGCCCATGGACCCTGGATTGGCCCAGTCCTGGAATCTCCGGTGCTCTGCAAATCCCACAAGTGCCATTT
CGAAAACGAATAAGGTGTAGGAATCTGCCCAGTAGTTATATGTTCCGGCTGGAGGAATGACTCCTGTCTTGAACCACGGGAGGGCTGTTTCCTCTGGAAT
TAGGCCAGCCTTTCCAAGAATTTCTGGTGCAATGGCTCCTACTGCACCCATCATTGCAGTACGTCCATTGAAGATTTCTCCATAGGCTAGCCATTTGGGC
TCAATGAATCCTCCAGTACCTTCAGGATCCGACAGTCCCAATGGATCGAATCCATAGAATGACTCCTGTCTTGAACCACGGGAGGGCTGTTTCCGCTGGA
ATTA