« Back to Brachypodium distachyon search


Detailed information on CNT30150205


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 1e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Brachypodium distachyonOryza sativa22.8632.7686.4696forward
CNT30673928Brachypodium distachyonSetaria viridis38.3344.2386.34161forward
CNT30372056Brachypodium distachyonArabidopsis thaliana20.9514.3386.3688forward
CNT30405509Brachypodium distachyonBeta vulgaris23.814.1584100forward
CNT3045175Brachypodium distachyonPrunus dulcis26.1924.0284.55110forward
CNT30125939Brachypodium distachyonPhyscomitrium patens39.2949.481.82165forward
CNT30303678Brachypodium distachyonTriticum aestivum47.1429.7394.95198forward
CNT30397679Brachypodium distachyonTriticum turgidum2030.2294.0584forward
CNT30540898Brachypodium distachyonBrassica napus21.1916.0185.3989forward
CNT30238548Brachypodium distachyonBrassica oleracea21.1910.5684.2789forward
CNT30442289Brachypodium distachyonAegilops tauschii78.151.994.51328forward
CNT30313529Brachypodium distachyonCamelina sativa19.5221.9885.3782forward
CNT3060116Brachypodium distachyonArabidopsis lyrata20.9518.4185.2388forward
CNT3077678Brachypodium distachyonBrassica juncea21.1914.5285.3989forward
CNT30264123Brachypodium distachyonBrassica rapa21.199.7685.3989forward
CNT30611481Brachypodium distachyonArabis alpina24.7612.7685.58104forward
CNT30474763Brachypodium distachyonSaccharum spontaneum62.6230.0987.83263forward
CNT30140296Brachypodium distachyonLolium perenne67.1429.0793.62282forward
CNT30687021Brachypodium distachyonTriticum urartu57.1449.0894.17240forward
CNT30350310Brachypodium distachyonEragrostis tef60.4836.9287.8254forward
CNT30368340Brachypodium distachyonSorghum bicolor27.8625.8886.32117forward
CNT30595666Brachypodium distachyonOryza meridionalis65.9522.2384.48277forward
CNT30575448Brachypodium distachyonOryza barthii22.6215.1587.3795forward
CNT30583070Brachypodium distachyonEchinochloa crusgalli62.6223.4685.93263forward
CNT30497204Brachypodium distachyonDigitaria exilis46.4336.4585.13195forward
CNT30115627Brachypodium distachyonOryza nivara31.97.8386.57134forward
CNT30557361Brachypodium distachyonPanicum hallii62.6247.6487.07263forward

Expression of CNT30150205

Peptides detected in this lncRNA

>peptide 1 (91 aa)
FKPLSRTTFHGRWVPSWRCTDRSIDLMMPLVELEAGEDVVVDGVGEMAWMDMPRKASMARRPFLISLSLSSANSLSLLVPKPSGLKMGPPG*

Sequence

>CNT30150205
ATTTTAAACCTCTCTCACGCACTACATTCCATGGACGATGGGTACCATCATGGCGATGCACGGATCGATCGATCGATTTGATGATGCCTTTAGTGGAACT
TGAGGCTGGTGAGGATGTTGTTGTTGACGGGGTCGGAGAGATGGCCTGGATGGACATGCCGAGGAAGGCGAGCATGGCAAGGCGGCCGTTCTTGATCTCC
TTGAGCTTGAGCTCTGCCAACTCCTTGTCGCTCTTGGTGCCGAAGCCGAGCGGGTTGAAGATGGGCCCGCCGGGGTAGGCGGGGTCGCCGGAGCCGCCGA
GGAACTTCTCCAGGCCCAGGAAGTACTGCTTCCCCATGGAGCCTGGGTTGTACCAGTCCTGCAGCCGCCGGTGCTCCGCGAACCCGATCAGCGCCATCTC
GAACACGAACAGCGTGTAGG