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Detailed information on CNT30649241


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 4e-90

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Rosa chinensisOryza sativa11.3444.0382.95129forward
CNT30372056Rosa chinensisArabidopsis thaliana18.3734.0482.3209forward
CNT30379782Rosa chinensisManihot esculenta41.8375.278.15476forward
CNT30405509Rosa chinensisBeta vulgaris31.5514.8881.06359forward
CNT30631202Rosa chinensisVigna unguiculata9.422.4384.11107forward
CNT3045167Rosa chinensisPrunus dulcis21.6269.6981.3246forward
CNT30540898Rosa chinensisBrassica napus26.3653.9680300forward
CNT30238557Rosa chinensisBrassica oleracea27.9448.480.19318forward
CNT30146039Rosa chinensisMedicago truncatula31.8147.6378.18362forward
CNT30442289Rosa chinensisAegilops tauschii11.3420.4182.17129forward
CNT30311401Rosa chinensisCamelina sativa25.5736.8879.38291forward
CNT3059858Rosa chinensisArabidopsis lyrata17.6635.0881.09201forward
CNT3081731Rosa chinensisBrassica juncea40.5168.8179.39461forward
CNT30264551Rosa chinensisBrassica rapa30.3244.7580.29345forward
CNT30611481Rosa chinensisArabis alpina16.4322.9481.28187forward
CNT30597278Rosa chinensisFraxinus excelsior37.785.1277.62429forward
CNT30608086Rosa chinensisGossypium raimondii17.2250.1381.12196forward
CNT30217954Rosa chinensisKalanchoe fedtschenkoi13.0941.3980.54149forward
CNT30210187Rosa chinensisHelianthus annuus22.8531.7880260forward
CNT30625096Rosa chinensisDaucus carota21.2725.3481.82242forward
CNT30687021Rosa chinensisTriticum urartu11.3426.3881.4129forward
CNT30350310Rosa chinensisEragrostis tef12.7421.0882.76145forward
CNT30479074Rosa chinensisArabidopsis halleri18.3736.2281.34209forward
CNT30621314Rosa chinensisCajanus cajan26.123.5579.46297forward
CNT30359331Rosa chinensisLactuca sativa22.6729.9382.95258forward
CNT30573352Rosa chinensisVitis vinifera41.5672.5579.49473forward
CNT3027741Rosa chinensisTheobroma cacao17.445.3185.35198forward
CNT30118713Rosa chinensisCitrus clementina39.3774.4278.35448forward
CNT30329767Rosa chinensisDioscorea rotundata23.944.4478.68272forward
CNT30557361Rosa chinensisPanicum hallii12.2125.1881.29139forward
CNT30725730Rosa chinensisLupinus angustifolius22.4138.0680255forward
CNT3040126Rosa chinensisMarchantia polymorpha14.6725.1980.84167forward

Expression of CNT30649241

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MLIGRTSLYIGLLATITLQKLISSYHVLRSV*

>peptide 2 (38 aa)
MRRRVLRREISISKQQKGQHSNIVQLCSLMELELQLVQ*

Sequence

>CNT30649241
TAGCTTAACTAAAATCTTAAATTAACTATTTTAACATGTCATTTCTTACAGATTCACATAATATAACATCAAAGTTTCTCACATAATCTTACAATGAGGA
GAAGAGTTTTGAGAAGAGAGATTTCAATTTCCAAACAACAAAAGGGGCAGCACTCAAATATTGTACAACTCTGTTCATTAATGGAACTTGAGCTTCAACT
CGTTCAGTGACTTCTCATCTTTTCCAAAGCCCAATGGGTTAAATAACGGCCCACCAGGGTAGGCTGGGTTATCGGATCCTCCCAAGTACTTCTCAAGGCC
CAAGAAGTATTGCTTGCTCATGGATCCGGGGTTGTACCAATCCTGGAAACGTCTGTGCTCGGCAAAGCCCATTAAGGCAAGCTCGAAGACGAATAGGGTG
TAAGGGTCGGCCCAATAGCTGTAGGTTCCGGCCGGGGGAATCACACCGGTTTGGAACCAAGGGAGAGCTGTTTCAGCTGGAATCAGGCCAAGTTTCCCCA
AGATCTCGGGTGCAATGGCACCGATTGCACCCAACATGGCATAACGTCCATTGATGACCTCACCATAAGCTAACCATCTTGGTTCGATGAACCCTCCGGT
GCCTTCTGGGTCTGAGAGGCCCAATGGGTCGAATCCATAGTCACCTGGAAGACTACAATTACACATAATTATTAGCCGGTGAATTCACAATAGTGAAATA
TTTCAGAGAAAATTTCATTACTAAAGTATGACATATTATGTTGTTACGTTATTTATATGCGTCATACACTATAAATTGACAATTTTATAACTCGCAACTG
GACAATCAAATTAATCAATTGCAATTAGTTGCAAGTTATTAACTAATTGAGACTGTAATGCGTTGTACACTTAAGATTTTTTTTCCTTTCCTCGTGATAT
CGGATTATTAAATATAAACGGACAACTTAACATATAACAAGATGAAAACACTAGCATATGAGAATATATGATTCATGTAGTCGATGCTTATAGGTAGAAC
AAGTTTGTATATCGGACTCTTGGCCACCATAACATTGCAAAAGTTGATTTCTAGCTATCATGTTCTTCGTTCTGTTTAGGGTTTCTTCAGTAGCATCATG
GAATAGAAAAGCAGAAGCACAGATTAGTAAATCACCTG