« Back to Arabidopsis halleri search


Detailed information on CNT30479074


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 6e-14

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691521Arabidopsis halleriOryza sativa11.2722.1889.2365forward
CNT30673615Arabidopsis halleriSetaria viridis29.1235.7484.52168forward
CNT30372056Arabidopsis halleriArabidopsis thaliana59.155.5496.77341forward
CNT30281438Arabidopsis halleriChenopodium quinoa25.8213.1479.87149forward
CNT30379782Arabidopsis halleriManihot esculenta44.8940.9280.31259forward
CNT30405509Arabidopsis halleriBeta vulgaris94.1122.5178.82543forward
CNT30526207Arabidopsis halleriPhaseolus vulgaris50.6125.3781.51292forward
CNT30631052Arabidopsis halleriVigna unguiculata41.5930.5782.5240forward
CNT30486017Arabidopsis halleriOlea europaea49.2228.7278.17284forward
CNT30708457Arabidopsis halleriGlycine max74.764.7180.05431forward
CNT3045167Arabidopsis halleriPrunus dulcis16.1226.3583.8793forward
CNT3085597Arabidopsis halleriVigna radiata50.2621.0183.45290forward
CNT30540204Arabidopsis halleriBrassica napus94.9798.7490.15548forward
CNT30233607Arabidopsis halleriBrassica oleracea94.4569.2590.09545forward
CNT30173586Arabidopsis halleriTrifolium pratense39.1723.6483.19226forward
CNT30145920Arabidopsis halleriMedicago truncatula44.5433.8283.27257forward
CNT30311401Arabidopsis halleriCamelina sativa10073.1394.28577forward
CNT3059858Arabidopsis halleriArabidopsis lyrata98.2798.9597.35567forward
CNT3082235Arabidopsis halleriBrassica juncea95.3272.4690.73550forward
CNT30259451Arabidopsis halleriBrassica rapa91.3372.2990.51527forward
CNT30611432Arabidopsis halleriArabis alpina98.9660.4986.51571forward
CNT30597278Arabidopsis halleriFraxinus excelsior54.2562.178.91313forward
CNT30475143Arabidopsis halleriSaccharum spontaneum26.6920.2185.06154forward
CNT30607765Arabidopsis halleriGossypium raimondii32.5828.182.45188forward
CNT30217954Arabidopsis halleriKalanchoe fedtschenkoi17.8528.6182.52103forward
CNT30649241Arabidopsis halleriRosa chinensis36.2218.3781.34209forward
CNT30210187Arabidopsis halleriHelianthus annuus93.0765.6581.75537forward
CNT30625265Arabidopsis halleriDaucus carota57.5437.1880.12332forward
CNT30350304Arabidopsis halleriEragrostis tef50.9537.2280.27294forward
CNT30368340Arabidopsis halleriSorghum bicolor26.6934.0783.77154forward
CNT30621314Arabidopsis halleriCajanus cajan95.1543.5479.6549forward
CNT30359331Arabidopsis halleriLactuca sativa33.4522.3982.9193forward
CNT30573352Arabidopsis halleriVitis vinifera58.7551.9981.71339forward
CNT3027741Arabidopsis halleriTheobroma cacao39.1751.7282.3226forward
CNT30118713Arabidopsis halleriCitrus clementina50.9548.8481.29294forward
CNT30329767Arabidopsis halleriDioscorea rotundata32.2430.3980.65186forward
CNT30583045Arabidopsis halleriEchinochloa crusgalli29.1221.7384.52168forward
CNT30557458Arabidopsis halleriPanicum hallii29.1233.684.52168forward
CNT30725175Arabidopsis halleriLupinus angustifolius39.1730.0181.86226forward

Expression of CNT30479074

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MLSESHQSHLENKECVIVCPVSVCPCWWNHTGLEPRKSSLWWNQTSLS*

>peptide 2 (42 aa)
YKRHKTHRMMITSVELEAGQDVVVDGISQVIKQVLERSHTGH*

>peptide 3 (34 aa)
MANRPLKISPYASHLGSMNPPVPSGSERPSGSNP*

>peptide 4 (31 aa)
MSLLVESHRFGTKEEQSLVESDQPFLESQEQ*

>peptide 5 (33 aa)
MASIASLPFLTSLSFNSFKDFSSFPNPRGTAFP*

Sequence

>CNT30479074
TACAAGAGACATAAAACACATAGGATGATGATCACCTCAGTGGAACTTGAGGCTGGTCAAGACGTTGTTGTTGATGGGATCAGCCAAGTGATCAAGCAGG
TTCTGGAAAGGTCCCACACCGGTCACTAGTCCCTGGATAAAGTAACCGAGGATGGCGAGCATAGCCAGTCTACCGTTCTTGACCTCCTTGAGTTTCAACT
CCTTCAAGGACTTCTCATCTTTCCCAAACCCTAGAGGTACTGCTTTCCCATAGATCCTGGGTTGTACCAGTCCTGTAACCTCCGATGCTCAGCGAATCCC
ATCAGAGCCATCTCGAAAACAAAGAGTGTGTAATTGTCTGCCCAGTAAGTGTATGTCCCTGCTGGTGGAATCACACCGGTTTGGAACCAAGGAAGAGCAG
TCTCTGGTGGAATCAGACCAGCCTTTCCTAGAATCTCAGGAGCAATAGCTCCAACTGCACCCAACATGGCGAACCGTCCGTTGAAGATCTCTCCGTATGC
TAGCCATCTCGGCTCAATGAACCCTCCAGTACCTTCTGGGTCTGAAAGACCAAGTGGGTCAAATCCATAGTCACCAG