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Detailed information on CNT30145920


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SY97|LHCA3_ARATH, E-value = 2e-125

BLAST vs NONCODE:
NONBRAT004778, E-value = 1e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Medicago truncatulaArabidopsis thaliana57.2470.8581.38435forward
CNT30405509Medicago truncatulaBeta vulgaris20.926.5987.42159forward
CNT30173588Medicago truncatulaTrifolium pratense35.1326.7392.51267forward
CNT30311401Medicago truncatulaCamelina sativa33.8232.5784.05257forward
CNT3059858Medicago truncatulaArabidopsis lyrata32.7643.4684.34249forward
CNT30611624Medicago truncatulaArabis alpina79.8760.1678.25607forward
CNT30210187Medicago truncatulaHelianthus annuus44.6141.4480.24339forward
CNT30625265Medicago truncatulaDaucus carota81.4569.3281.1619forward
CNT30479074Medicago truncatulaArabidopsis halleri33.8244.5483.27257forward
CNT30359023Medicago truncatulaLactuca sativa51.5874.3879.85392forward
CNT3027741Medicago truncatulaTheobroma cacao32.1155.8478.69244forward
CNT30329767Medicago truncatulaDioscorea rotundata44.4755.2379.29338forward
CNT3048728Medicago truncatulaCucumis sativus17.2434.3882.44131forward

Expression of CNT30145920

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MPFPSQRVCNCLPSSCMFLLVESRRFGTKGVLFPRELNLLCREFQVL*

>peptide 2 (37 aa)
MLVRRNLQALSQVLRSIVFPWNQDCTNLGVFCVLQIP*

>peptide 3 (38 aa)
MNPPVPSGSESPRGSNPKSPGRLQVMMRPNKVNFILDT*

Sequence

>CNT30145920
AACCAACAAGAGCAAAGAAAAGAATATATCATATATATAATACATTCATTTAGTGGAACTTGAGACTGGTCAAGATGTTGTTGTTGACAGGGTCAGCCAA
ATGATCTAAGAGGTTTTGGTATGGTCCAACTCCTGTAACAAGAGCTTGAATAAAGTAACCCAATATTGCCAACATTGCTAACCTTCCATTCTTAACTTCC
TTCAGCTTTAATTCTTTCAATGATTTCTCATCTTTACCAAAACCAAGAGGGTTAAATATAGGTCCACCAGGGTATGCTGGTTCGCCGGAACCTCCAAGCC
CTTTCTCAAGTCCTAAGAAGTATTGTTTTCCCATGGAACCAGGATTGTACCAATCTTGGAGTCTTCTGTGTTCTGCAAATCCCATGAATGCCATTTCCAT
CACAAAGAGTGTGTAATTGTCTGCCCAGTAGTTGTATGTTCCTGCTGGTGGAATCACGCCGGTTTGGAACCAAGGGAGTGCTGTTTCCGCGGGAATTAAA
CCTGCTTTGCCGAGAATTTCAGGTGCTATAGCTCCGGCTGCTCCCAACATTGCAAATCGGCCGTTGATTATCTCACCGTATGCTAACCATCTTGGTTCAA
TGAATCCACCGGTTCCTTCGGGATCTGAAAGTCCTAGAGGGTCAAATCCAAAGTCACCCGGAAGGCTGCAAGTGATGATGAGGCCAAATAAAGTCAATTT
CATACTTGACACATAGTGTTACTCAACAAAGTTGCATGCATATCTACATGTTGTATAGTT