« Back to Phaseolus vulgaris search


Detailed information on CNT30526207


BLAST search results

BLAST vs Swiss-Prot:
sp|P27522|CB13_SOLLC, E-value = 8e-86

BLAST vs NONCODE:
NONBRAT004778, E-value = 6e-45

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30372056Phaseolus vulgarisArabidopsis thaliana37.9771.1780.55437forward
CNT30281438Phaseolus vulgarisChenopodium quinoa28.0628.4883.28323forward
CNT30379782Phaseolus vulgarisManihot esculenta40.4973.6283.69466forward
CNT30405509Phaseolus vulgarisBeta vulgaris24.2411.5781.72279forward
CNT30631224Phaseolus vulgarisVigna unguiculata60.8285.8990.71700forward
CNT30486017Phaseolus vulgarisOlea europaea39.3645.879.69453forward
CNT30711417Phaseolus vulgarisGlycine max43.6128.0492.83502forward
CNT3045175Phaseolus vulgarisPrunus dulcis11.1227.9589.06128forward
CNT3085597Phaseolus vulgarisVigna radiata64.8154.0691.69746forward
CNT30543419Phaseolus vulgarisBrassica napus39.0150.2879.73449forward
CNT30238557Phaseolus vulgarisBrassica oleracea27.5448.2580.76317forward
CNT30145816Phaseolus vulgarisMedicago truncatula46.2225.5684.59532forward
CNT30311401Phaseolus vulgarisCamelina sativa25.5437.2680.61294forward
CNT3059858Phaseolus vulgarisArabidopsis lyrata24.5949.3980.92283forward
CNT3081731Phaseolus vulgarisBrassica juncea39.5367.9179.78455forward
CNT30264551Phaseolus vulgarisBrassica rapa39.5359.0179.78455forward
CNT30611624Phaseolus vulgarisArabis alpina37.9743.3179.41437forward
CNT30597278Phaseolus vulgarisFraxinus excelsior36.9284.3380.47425forward
CNT30608086Phaseolus vulgarisGossypium raimondii12.6837.3489.73146forward
CNT30217954Phaseolus vulgarisKalanchoe fedtschenkoi9.2129.4483.02106forward
CNT30210187Phaseolus vulgarisHelianthus annuus27.1138.1481.09312forward
CNT30625164Phaseolus vulgarisDaucus carota45.4445.1679.92523forward
CNT30479074Phaseolus vulgarisArabidopsis halleri25.3750.6181.51292forward
CNT30621314Phaseolus vulgarisCajanus cajan33.7130.7789.69388forward
CNT30359247Phaseolus vulgarisLactuca sativa39.0153.3379.06449forward
CNT30422640Phaseolus vulgarisPapaver somniferum11.2931.7884.62130forward
CNT30573352Phaseolus vulgarisVitis vinifera40.471.3280.86465forward
CNT3027741Phaseolus vulgarisTheobroma cacao20.8554.9282.92240forward
CNT3055927Phaseolus vulgarisAmborella trichopoda13.9937.1880.12161forward
CNT30118713Phaseolus vulgarisCitrus clementina38.2373.0981.14440forward
CNT3037927Phaseolus vulgarisCucumis melo10.1724.4885.47117forward
CNT30329767Phaseolus vulgarisDioscorea rotundata33.6263.2480.62387forward
CNT30725700Phaseolus vulgarisLupinus angustifolius38.7549.8386.77446forward
CNT3048728Phaseolus vulgarisCucumis sativus11.3834.3880.92131forward

Expression of CNT30526207

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MAVLFPQGSDQPCQEFQVLWNLLHPTLQNDH*

>peptide 2 (40 aa)
MMPNKVNSTTFILYIYYFTLLNCLNFKVFCFIKKFVLIGL*

>peptide 3 (64 aa)
MLAHQNLQDPSLVLRSTVSPLSLVLPNLGIFCALQIPSVPSQTQRGCRSLPSSCRFLQVGPHRF*

>peptide 4 (41 aa)
MEPTAPNIAKRPLMTSPYASHLGSMNPPVPSGSESPRGSNP*

Sequence

>CNT30526207
GTGAAGAGATAACAGAAGTTTCCCATGTTTGTAATTGTTTTACAGTCATTTCTTAGAGGGCCATGAAGCAAGGTGAAGATGATGATGATGATACAGTACC
AAAGAGCAAAGAGAGGATGCAGAAAAGTGACTGAGTTTTGGTAACTGCTTACAACAACAACCAAGTAAAGAATATGTAACAGCATATGATACACTTAGTG
GAACTTGAGACTGGTCAAGACATTGTTGTTGACAGGGTCTGCAAGATGATCTAAGAGCTTGAATAAAGTAACCCAAAATTGCCAACATAGCCAACCTTCC
ATTCTTCACCTCCTTCAGCTTCAAATCCTTCAAGGATTTCTCATCTTTCCCAAAACCAAGAGGGTTGAAGAGAGGTCCTCCTGGGTATGCTGGCTCACCA
GAACCTCCAAGACCCTTCTCTAGTCCTAAGAAGTACTGTTTCCCCATTGAGCCTGGTTTTGCCCAATCTTGGAATCTTCTGTGCTCTGCAAATCCCATCA
GTGCCATCTCAAACACAAAGAGGGTGTAGGAGTCTGCCCAGTAGTTGTAGGTTCCTGCAGGTGGGACCACACCGGTTCTGAACCATGGCAGTGCTGTTTC
CTCAGGGATCAGACCAGCCTTGCCAAGAATTTCAGGTGCTATGGAACCTACTGCACCCAACATTGCAAAACGACCATTGATGACTTCACCATATGCTAGC
CATTTGGGCTCAATGAACCCTCCTGTTCCTTCAGGGTCTGAAAGCCCAAGAGGGTCAAATCCATAGTCACCAGGAAGACTGCAAACCAAATGATGCCAAA
CAAAGTCAATTCCACCACCTTCATACTATATATCTATTATTTCACTCTTCTAAATTGCTTAAATTTCAAAGTATTTTGTTTTATTAAGAAGTTTGTTTTA
ATTGGCTTATAAGACTATGTTTGTAACACTTATATACTGTGAAATACTCTAATTTCCAATCCATTCCTCATGCCGTCGACCTCATACAGTCAAGAGTTAT
AGATGGTCTAATATCCGATAATAGGTGACAGGTCACACGATACATTCAACAAACTCTATAAACTTTTAAATGAATTTATAACATGTTAATTAAGAAGAAG
TGGAATTTAGCAGTTCAGTTTTATTCTCTTATGCTATAGGTGATTTACCTG