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Detailed information on CNT30390900


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 9e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697243Triticum turgidumOryza sativa55.229.6889.79382forward
CNT30677363Triticum turgidumSetaria viridis53.6156.6488.95371forward
CNT30524487Triticum turgidumSetaria italica31.6516.4289.95219forward
CNT30518741Triticum turgidumJuglans regia32.5145.3681.33225forward
CNT30702585Triticum turgidumQuercus lobata13.2939.8383.792forward
CNT30273043Triticum turgidumChenopodium quinoa26.737.4184.32185forward
CNT30380779Triticum turgidumManihot esculenta25.8728.7382.12179forward
CNT30405165Triticum turgidumBeta vulgaris20.2326.7284.29140forward
CNT30710704Triticum turgidumGlycine max27.8924.8178.76193forward
CNT30223084Triticum turgidumHordeum vulgare54.4848.3390.98377forward
CNT30586189Triticum turgidumMusa acuminata26.0125.2187.22180forward
CNT30237267Triticum turgidumBrassica oleracea21.11881.51146forward
CNT30439071Triticum turgidumAegilops tauschii26.7355.3991.35185forward
CNT30258087Triticum turgidumAvena sativa31.9447.2296.83221forward
CNT30662744Triticum turgidumTriticum dicoccoides62.4380.995.37432forward
CNT30263633Triticum turgidumBrassica rapa21.5324.9279.87149forward
CNT30462400Triticum turgidumSaccharum spontaneum23.2711.8386.34161forward
CNT30139084Triticum turgidumLolium perenne25.8721.3689.39179forward
CNT306434Triticum turgidumZea mays31.3686.1188.02217forward
CNT30610790Triticum turgidumGossypium raimondii27.662.4282.72191forward
CNT30216367Triticum turgidumKalanchoe fedtschenkoi26.4550.5585.25183forward
CNT3068263Triticum turgidumLeersia perrieri22.2520.2491.56154forward
CNT30684371Triticum turgidumTriticum urartu34.2564.5899.58237forward
CNT30348318Triticum turgidumEragrostis tef28.926.690.5200forward
CNT30365623Triticum turgidumSorghum bicolor26.4516.490.16183forward
CNT30371242Triticum turgidumOryza glumipatula41.3343.6688.81286forward
CNT30570332Triticum turgidumVitis vinifera27.8932.3380.31193forward
CNT30319836Triticum turgidumAsparagus officinalis20.6617.9280.42143forward
CNT3037127Triticum turgidumCucumis melo23.9930.880.72166forward
CNT30150970Triticum turgidumBrachypodium distachyon23.4167.2290.74162forward
CNT30104026Triticum turgidumOryza rufipogon28.922.6589.5200forward
CNT30582028Triticum turgidumEchinochloa crusgalli21.9721.3591.45152forward
CNT30117905Triticum turgidumOryza nivara32.0819.2290.09222forward
CNT30595262Triticum turgidumEragrostis curvula23.2722.388.82161forward
CNT30604735Triticum turgidumOryza punctata26.5921.8390.76184forward
CNT30557232Triticum turgidumPanicum hallii23.2724.2189.44161forward
CNT30334895Triticum turgidumCynara cardunculus25.8743.9880.45179forward
CNT30725414Triticum turgidumLupinus angustifolius21.116.3980.14146forward

Expression of CNT30390900

Peptides detected in this lncRNA

>peptide 1 (39 aa)
EIISQKNYRVPKGGRFRLFILTVANKGNNALEKTMRIQQ*

>peptide 2 (47 aa)
MFSLASAASPSLVYLPSCARELALARSSSASCAAATFSGRPPHVLRV*

>peptide 3 (68 aa)
NNISEKLPRSKGGALQIVHTYGSKQRQQCSRKNHANTTVGPFQSSLLRVAKHSIYSLSISSIRAGLDL*

Sequence

>CNT30390900
GAAATAATATCTCAGAAAAATTACCGCGTTCCAAAGGGGGGGCGCTTCAGATTGTTCATACTTACGGTAGCAAACAAAGGCAACAATGCTCTAGAAAAAA
CCATGCGAATACAACAGTAGGACCATTCCAAAGTAGTTTACTTAGGGTGGCAAAACACAGTATATACTCTCTGTCCATCTCTTCCATCAGAGCTGGTCTC
GACCTGTAACAACGACGACCCACTGGCTGGCTAAGGCGCCCTCAAGCTGCTCAAGGCGCTACTGGCTGACAGTGATGCGGTAGATTATTAGATAGACAGC
TCGCCGACGGATCAGTAGCTGTAGTTCTTGACGAACATGTTCTCGCTGGCTTCCGCGGCCTCGCCGTCGCTGGTGTACTTGCCGAGCTGCGCCAGGGAGT
TGGCCTTGGCGCGCAGCAGCAGCGCCTCCTGCGCCGCGGCCACGTTCTCCGGCCGCCCGCCCCACGTCTTGAGGGTGTAGCTGGCTACTTCCTCAGGGGT
GGCCCTGTCCTTGCACTCAGCACCAGGGGTCACCATGCTTGGCTTCAGGAGGATGCCCTCAAACATGACGTTGTTCTGAGCCATGTAGTAGAAGGTCTCC
GCCCACACCTTCTGTGCGACCTCGAAGGTCCTCTCGATGCCGTGCTCACCGTCGAGCATGATCTCAGGCTCCACAATCGGCACCAGCCCATT