« Back to Sorghum bicolor search


Detailed information on CNT30365623


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LF98|ALFC8_ARATH, E-value = 5e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697185Sorghum bicolorOryza sativa20.4358.9190.35228forward
CNT30677085Sorghum bicolorSetaria viridis19.842.6691.86221forward
CNT30524487Sorghum bicolorSetaria italica20.1616.8792225forward
CNT30314796Sorghum bicolorCorylus avellana20.0732.6182.14224forward
CNT30518741Sorghum bicolorJuglans regia19.5343.9582.11218forward
CNT30702585Sorghum bicolorQuercus lobata5.8228.1487.6965forward
CNT30377016Sorghum bicolorArabidopsis thaliana7.4422.884.3483forward
CNT30381342Sorghum bicolorManihot esculenta19.6227.182.19219forward
CNT30405165Sorghum bicolorBeta vulgaris15.2332.4484.71170forward
CNT30710572Sorghum bicolorGlycine max17.9244.7480200forward
CNT30297329Sorghum bicolorTriticum aestivum14.8771.2485.54166forward
CNT30390900Sorghum bicolorTriticum turgidum16.426.4590.16183forward
CNT30586189Sorghum bicolorMusa acuminata20.6132.2181.74230forward
CNT30258087Sorghum bicolorAvena sativa20.3448.587.22227forward
CNT30136123Sorghum bicolorLolium perenne21.8645.0286.48244forward
CNT306434Sorghum bicolorZea mays20.791.6790.04231forward
CNT30610790Sorghum bicolorGossypium raimondii19.5371.2483.94218forward
CNT30128108Sorghum bicolorCorymbia citriodora12.125.8184.44135forward
CNT30683741Sorghum bicolorTriticum urartu10.5727.2590.68118forward
CNT30348318Sorghum bicolorEragrostis tef19.5328.9990.83218forward
CNT30570332Sorghum bicolorVitis vinifera17.4732.6683.08195forward
CNT30104026Sorghum bicolorOryza rufipogon20.726.1690.04231forward
CNT30582047Sorghum bicolorEchinochloa crusgalli24.1942.0686.67270forward
CNT30117905Sorghum bicolorOryza nivara20.72090.04231forward
CNT30551796Sorghum bicolorOryza brachyantha20.4329.1292.54228forward
CNT30334895Sorghum bicolorCynara cardunculus9.0524.8284.16101forward

Expression of CNT30365623

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MPRVGALVHGVQVLGRLNLRLPTRQELHALHKHK*

>peptide 2 (40 aa)
MPSLAAAASPSPVYLPSCARELALARSSSASCAAFTFSAP*

>peptide 3 (36 aa)
MAFRFWVASTSDCPPDRNCMHCTSTNNYSSEHQKTM*

>peptide 4 (48 aa)
WRGDVHATSFCDLYRINLYLRPYEFEIGLYVNFESCGMSNSKPNSLVH*

>peptide 5 (53 aa)
MMPGTAGGILLWRSLRVYSATCSGVAFSSHSAPGVTMLGLSKMPSNITLFSAM*

>peptide 6 (61 aa)
MTHATGWGSGSWRSGSGSPQPQTAHQTGTACIAQAQIITVQNIKRPCDASGERNLLARRES*

>peptide 7 (30 aa)
MPCSPSRRISGTIPCSLRTSTIFFPSTVDW*

Sequence

>CNT30365623
TGGCGAGGTGACGTGCATGCTACAAGTTTCTGTGATCTATATAGAATCAATTTATATCTTCGACCCTATGAATTTGAGATAGGCTTATATGTCAACTTTG
AAAGTTGTGGAATGTCAAATTCCAAGCCAAATAGCCTAGTCCACTAAGTAGATTCCAATTCCTCCAAATGAAATGTAATCAGGCCTCAAGGTAGTAGTGA
AATTGCAGTGTACTTTTCCAGCTGAACCTGTAATGGCAGACTGCCTACAGTGCCCCCGAGGAACGTACTAGCAGCAGTGGTATCATCGTCTTAGTAGCTG
TAGTTCTTGACGAACATGCCCTCCTTGGCGGCAGCGGCCTCACCATCGCCGGTGTACTTGCCGAGCTGTGCCAGGGAATTGGCCTTGGCGCGCAGCAGCA
GCGCGTCCTGTGCTGCCTTCACGTTCTCAGCGCCCTAGCGTAGGAGAATGACACATGCCACGGGTTGGGGCTCTGGTTCATGGCGTTCAGGTTCTGGGTC
GCCTCAACCTCAGACTGCCCACCAGACAGGAACTGCATGCATTGCACAAGCACAAATAATTACAGTTCAGAACATCAAAAGACCATGTGATGCATCCGGG
GAGAGAAACTTGTTAGCAAGAAGAGAGAGCTGACCATGATGCCGGGAACGGCAGGAGGGATCCTTCTGTGGAGGAGCTTGAGGGTGTACTCGGCTACTTG
CTCAGGAGTGGCCTTCTCCTCGCACTCAGCACCAGGGGTAACCATGCTGGGCTTGAGCAAGATGCCCTCAAACATCACATTGTTCTCAGCCATGTAGTAG
AAGGTCTCTGCCCACACCTTCTGTGCGACCTCGAAGGTCCTCTCGATGCCATGCTCACCATCAAGAAGGATTTCGGGCACGATTCCCTGCTCATTAAGGA
CGTCAACAATCTTCTTTCCATCAACAGTTGACTGGTAGAGGGTCTCCTCGAAGAGGATAGCACCAGAGATGTACTGTCCTAGGCCTGGGGCACTGACAAG
GAGGGTCCTGTAAGCCTGGCGGTTGGCCTCAGTGTTCTCAAGGCCAATGGAGTCAAGCCTCTTGCCGCAGGTAGCGTTCGACTCATCCATGGCAAGGATA
CCCCTTCCTGGTGACG