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Detailed information on CNT30604735


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 7e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Oryza punctataOryza sativa21.8314.0497.28184forward
CNT30677085Oryza punctataSetaria viridis21.8335.5290.22184forward
CNT30524487Oryza punctataSetaria italica20.1712.7491.18170forward
CNT30314796Oryza punctataCorylus avellana17.6721.6981.21149forward
CNT30518741Oryza punctataJuglans regia20.1734.2781.76170forward
CNT30273043Oryza punctataChenopodium quinoa20.176.8183.53170forward
CNT30381313Oryza punctataManihot esculenta14.1221.1482.35119forward
CNT30405165Oryza punctataBeta vulgaris15.925.5785.07134forward
CNT30297329Oryza punctataTriticum aestivum11.3941.289.5896forward
CNT30390900Oryza punctataTriticum turgidum21.8326.5990.76184forward
CNT30586189Oryza punctataMusa acuminata20.6424.3785.63174forward
CNT30258087Oryza punctataAvena sativa21.8339.3290.22184forward
CNT30662744Oryza punctataTriticum dicoccoides15.5424.5388.55131forward
CNT30139084Oryza punctataLolium perenne20.882188.07176forward
CNT306434Oryza punctataZea mays21.1270.6391.01178forward
CNT30610790Oryza punctataGossypium raimondii15.0741.584.25127forward
CNT30216367Oryza punctataKalanchoe fedtschenkoi21.2349.4586.03179forward
CNT3068263Oryza punctataLeersia perrieri26.6929.5784.44225forward
CNT30207455Oryza punctataHelianthus annuus16.2520.7381.02137forward
CNT30345063Oryza punctataEragrostis tef21.3565.4587.22180forward
CNT30367530Oryza punctataSorghum bicolor15.5438.5393.13131forward
CNT30597047Oryza punctataOryza meridionalis36.6531.7982.2309forward
CNT30371242Oryza punctataOryza glumipatula16.3721.0797.83138forward
CNT30570332Oryza punctataVitis vinifera21.4730.3281.77181forward
CNT30319836Oryza punctataAsparagus officinalis19.4520.5582.32164forward
CNT3037127Oryza punctataCucumis melo14.1222.0884.03119forward
CNT30150970Oryza punctataBrachypodium distachyon15.5454.3690.08131forward
CNT30582028Oryza punctataEchinochloa crusgalli38.0845.0887.23321forward
CNT30117905Oryza punctataOryza nivara21.8315.9397.28184forward
CNT30557146Oryza punctataPanicum hallii7.8327.1693.9466forward
CNT30334895Oryza punctataCynara cardunculus18.6238.5779.62157forward

Expression of CNT30604735

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MPSLASAASPSLVYLPSCASEFALARRSSASCAAFTFSALSLHSAPGVTMLGLRRMPSNITLFSAM*

Sequence

>CNT30604735
GAAGCAGCTCCTGAAGTGAGGATGGCAGCAACATGAGCTGTTGGACATTCGCACACATCTCCAAATTTTGCTTCAGTTTATGTGGTGCCAGGGCAGGCAA
CAGATTATGAAGCAAGGGTAACCAGGAACACTGGCATACGTAATACGCAAAATTTTGCAGTAACCAAATCGATTCACAGGCCACACATACAGGTAGTATA
CAGATTCGTTTACACAAGATTGTTGCTGAGGCAAAACACAAGATATGTATATCAAACGTTCTAGAAAGATCGTGTGATGAATACATGAGTAGGAACGACT
GAACCACCATTCCATGTCTGTTCTTAAGGTAAAATTAATTAATGCAGTATAGTTTTTAACTTTGTCCATCGATTGATCGAACGATCTCAACCTGTAACTG
TGACTGATGACACACTGGCTACAGTGCCCTCAACATACTAGCAGTACATATAGCAGTAGTAGCAGCAGCAGCTTCACTGATTGATTTGATGATGGATTGA
GAGATTGATTGATCTGATTAGTAGACGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCAGCGGCCTCGCCGTCGCTGGTGTACTTACCGAGCTGCGCCA
GCGAGTTTGCCTTGGCGCGGAGGAGCAGCGCGTCCTGCGCCGCCTTCACGTTCTCCGCCCTGTCCTTGCACTCAGCACCTGGTGTCACCATGCTCGGCTT
GAGGAGGATGCCCTCGAACATCACATTGTTCTCGGCCATGTAGAAGAAGGTCTCCGCCCACACCTTCTGCGCCACCTCGAAGGTCCTGTCGATGCCGTGC
TCACCGTCGAGGAGGATCTCAGGCTCGACGATCGGCACCAAAC