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Detailed information on CNT30150970


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697243Brachypodium distachyonOryza sativa62.2411.6689.33150forward
CNT30676761Brachypodium distachyonSetaria viridis67.6350.4688.34163forward
CNT30524148Brachypodium distachyonSetaria italica70.5425.888.24170forward
CNT30314796Brachypodium distachyonCorylus avellana46.0616.1682.88111forward
CNT30223084Brachypodium distachyonHordeum vulgare65.5620.2691.14158forward
CNT30390900Brachypodium distachyonTriticum turgidum67.2223.4190.74162forward
CNT30439071Brachypodium distachyonAegilops tauschii24.917.9691.6760forward
CNT30255936Brachypodium distachyonAvena sativa26.1417.1296.8363forward
CNT30662744Brachypodium distachyonTriticum dicoccoides72.6132.7790.29175forward
CNT30462400Brachypodium distachyonSaccharum spontaneum70.5412.4985.88170forward
CNT30136123Brachypodium distachyonLolium perenne56.8525.2893.43137forward
CNT3017095Brachypodium distachyonZea mays51.8723.5891.2125forward
CNT3068263Brachypodium distachyonLeersia perrieri62.2419.7190150forward
CNT30684371Brachypodium distachyonTriticum urartu33.6122.0792.5981forward
CNT30345068Brachypodium distachyonEragrostis tef67.6318.2387.73163forward
CNT30367530Brachypodium distachyonSorghum bicolor70.545088.82170forward
CNT30620107Brachypodium distachyonCajanus cajan41.497.1982100forward
CNT30371242Brachypodium distachyonOryza glumipatula62.2422.989.33150forward
CNT30104230Brachypodium distachyonOryza rufipogon78.427.6789.42189forward
CNT30578122Brachypodium distachyonOryza barthii51.0415.6188.62123forward
CNT30582099Brachypodium distachyonEchinochloa crusgalli64.7328.9487.82156forward
CNT30117905Brachypodium distachyonOryza nivara51.0410.6588.62123forward
CNT30595262Brachypodium distachyonEragrostis curvula70.5423.5588.82170forward
CNT30604735Brachypodium distachyonOryza punctata54.3615.5490.08131forward
CNT30557232Brachypodium distachyonPanicum hallii70.5425.5688.24170forward

Expression of CNT30150970

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MPSLAAAASPSLVYFPSCAREFALARSSSASCAAATFSGRPPHVFRHVFSVASTSDCP

>peptide 2 (67 aa)
MRLGSVAVVLDEHAFLGGGGLAVAGVLPQLRQGVCLGAQQQCLLRRRHVLRPSSPRLQARVQRCLHL*

Sequence

>CNT30150970
CTGGTTTTCACTCACAGGCGTTGAAGCTTGATGCGATTAGGATCAGTAGCTGTAGTTCTTGACGAACATGCCTTCCTTGGCGGCGGCGGCCTCGCCGTCG
CTGGTGTACTTCCCCAGCTGCGCCAGGGAGTTTGCCTTGGCGCGCAGCAGCAGTGCCTCCTGCGCCGCCGCCACGTTCTCCGGCCGTCCTCCCCACGTCT
TCAGGCACGTGTTCAGCGTTGCCTCCACCTCTGACTGCCCG