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Detailed information on CNT30263633


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30377016Brassica rapaArabidopsis thaliana21.9135.9992.37131forward
CNT30380779Brassica rapaManihot esculenta26.9225.8484.47161forward
CNT30390900Brassica rapaTriticum turgidum24.9221.5379.87149forward
CNT30540807Brassica rapaBrassica napus63.71104.3892.91381forward
CNT30237267Brassica rapaBrassica oleracea101.5174.8589.62607forward
CNT30145300Brassica rapaMedicago truncatula7.3620.1890.9144forward
CNT3075914Brassica rapaBrassica juncea97.8396.5391.79585forward
CNT30610790Brassica rapaGossypium raimondii27.9354.5883.83167forward
CNT30128108Brassica rapaCorymbia citriodora20.423.3382.79122forward
CNT30365786Brassica rapaSorghum bicolor14.3833.283.7286forward
CNT30725414Brassica rapaLupinus angustifolius27.9318.7483.83167forward

Expression of CNT30263633

Peptides detected in this lncRNA

>peptide 1 (53 aa)
MFSDKCSGEHVRRRRTRAMGLAATCSGVALSLDSAPGVTMLVFRRIPSNITLF*

>peptide 2 (86 aa)
MISSTLLSSIGVAFDEHTLLSLFRLAFSGVFSKLSQRVGLGTSQESGLSSVHVLSSASPCFQTSVLESTCVGEGHVPWVWRQLVQE*

>peptide 3 (36 aa)
MIITTKLKQMQQRHLLRLLSQYHDLFNIVVFNRCSL*

Sequence

>CNT30263633
GATAACTTCAATATATTAAAGCTTATTAAAAAGGAGTAGCTAATGCAAATTAAGCAGATAATATAAATGATTTGACATGATAATAACAACCAAACTCAAA
CAAATGCAACAAAGACATTTGCTTCGTCTCCTTTCACAATATCATGATCTCTTCAACATTGTTGTCTTCAATAGGTGTAGCCTTTGACGAACATACCCTC
CTTAGCCTCTTCAGACTCGCCTTCTCCGGTGTATTTTCCAAGCTGAGCCAACGAGTTGGCCTTGGCACGAGCCAAGAGAGTGGTCTGAGCAGCGTTCACG
TTCTCAGCTCTGCCTCCCCATGTTTTCAGACAAGTGTTCTGGAGAGCACGTGCGTAGGAGAAGGACACGTGCCATGGGTTTGGCGGCAACTTGTTCAGGA
GTAGCTCTGTCTTTAGACTCGGCTCCGGGAGTCACCATGCTCGTCTTCAGGAGGATACCTTCAAACATTACATTGTTCTGAGCAAGGTAAAAGAAAACCT
CAGCCCAAACCTTCTCAGCAACTTCGTAAGTCCTGTCAATGTCGTGTTCTCCGTCCAACAAGATCTCTGGCTCCACAATTGGGACCAATCCACTGTCC