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Detailed information on CNT30582028


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Echinochloa crusgalliOryza sativa23.612.8191.67168forward
CNT30677085Echinochloa crusgalliSetaria viridis25.1434.5692.74179forward
CNT30518741Echinochloa crusgalliJuglans regia20.5129.4482.19146forward
CNT30390900Echinochloa crusgalliTriticum turgidum21.3521.9791.45152forward
CNT30586189Echinochloa crusgalliMusa acuminata21.3521.2985.53152forward
CNT30258087Echinochloa crusgalliAvena sativa23.1735.2689.7165forward
CNT30610790Echinochloa crusgalliGossypium raimondii15.3135.6288.07109forward
CNT30216367Echinochloa crusgalliKalanchoe fedtschenkoi23.1745.5884.85165forward
CNT30345063Echinochloa crusgalliEragrostis tef24.4463.2791.38174forward
CNT30117905Echinochloa crusgalliOryza nivara23.3114.3791.57166forward
CNT30604735Echinochloa crusgalliOryza punctata45.0838.0887.23321forward

Expression of CNT30582028

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MPSLASAASPSLLYLPSCARELALARSSSASCAALTFSGRPAHVLRQA*

>peptide 2 (61 aa)
SQVPKFVYNNMQNFVVTKSTGHIKICLLDFVGKIQREADRQSSHNSSKPCKNTVTRFHIFT*

Sequence

>CNT30582028
ATCCCAGGTACCAAAATTTGTGTATAATAATATGCAAAACTTTGTAGTAACCAAATCCACAGGCCACATAAAGATTTGTCTGCTCGACTTTGTCGGTAAA
ATACAGAGAGAGGCAGATCGACAAAGCTCACACAACTCTAGCAAACCATGCAAAAATACAGTAACCCGATTCCATATTTTCACTTAGGATAGTAATTAAA
ACTGCATGCAGTGTGTACCATCTAAACCTGTAATGGCACACTGCCTACGGTGCCCTCGAGGTTGGTACTAGCAGCGAGCTTAGTATCATCATCATCGTCT
TAATAGACGTATTCTTGACGAACATGCCCTCATTGGCCTCGGCGGCCTCGCCGTCGCTGCTGTACTTGCCGAGCTGCGCCAGGGAGTTGGCCTTGGCACG
CAGCAGCAGCGCGTCCTGCGCCGCCTTGACGTTCTCCGGCCGGCCGGCCCATGTCTTGAGGCAGGCGTGACCATGCTGGGCTTGAGGAGGATGCCCTCAA
ACATCACATTGTTCTCAGCCATGTAGAAGAAGGTCTCGGCCCACACCTTCTGCGCGACCTCGAAGGTCCTCTCGATGTCGTGCTCGCCGTCGAGAAGGAT
TTCAGGCTCCACAATCGGCACAAGACCGTTGTCCTAGCATAGCGTATCCACAGATAAGATGTTTATACACATGCATGTTGAAAGGAAAACAAAATGGTGA
GATATACTCCGT