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Detailed information on CNT30117905


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697077Oryza nivaraOryza sativa68.8369.92100795forward
CNT30677085Oryza nivaraSetaria viridis21.6548.2690250forward
CNT30524487Oryza nivaraSetaria italica21.318.4489.43246forward
CNT30314796Oryza nivaraCorylus avellana22.6838.1482.44262forward
CNT30518741Oryza nivaraJuglans regia21.7350.682.47251forward
CNT30702585Oryza nivaraQuercus lobata4.6823.3888.8954forward
CNT30377016Oryza nivaraArabidopsis thaliana7.1922.884.3483forward
CNT30273043Oryza nivaraChenopodium quinoa20.959.784.71242forward
CNT30381342Oryza nivaraManihot esculenta18.9627.181.28219forward
CNT30405165Oryza nivaraBeta vulgaris14.9833.0284.97173forward
CNT30708796Oryza nivaraGlycine max13.5132.6480.77156forward
CNT30223861Oryza nivaraHordeum vulgare10.4821.391.74121forward
CNT30390900Oryza nivaraTriticum turgidum19.2232.0890.09222forward
CNT30586189Oryza nivaraMusa acuminata14.6323.6785.21169forward
CNT30541563Oryza nivaraBrassica napus15.4126.6979.78178forward
CNT30237332Oryza nivaraBrassica oleracea11.0853.3381.25128forward
CNT30258087Oryza nivaraAvena sativa23.6458.3390.84273forward
CNT3075755Oryza nivaraBrassica juncea15.4126.1479.78178forward
CNT30139084Oryza nivaraLolium perenne20.4328.1687.29236forward
CNT306434Oryza nivaraZea mays21.4798.4188.31248forward
CNT30610790Oryza nivaraGossypium raimondii20.9579.0883.06242forward
CNT30216367Oryza nivaraKalanchoe fedtschenkoi16.1951.6687.17187forward
CNT3068331Oryza nivaraLeersia perrieri14.0321.1298.77162forward
CNT30207455Oryza nivaraHelianthus annuus16.128.1481.72186forward
CNT30128108Oryza nivaraCorymbia citriodora13.7730.486.16159forward
CNT30345063Oryza nivaraEragrostis tef23.8110088.36275forward
CNT30365623Oryza nivaraSorghum bicolor2020.790.04231forward
CNT30371334Oryza nivaraOryza glumipatula32.7344.63100378forward
CNT30570332Oryza nivaraVitis vinifera21.6541.8880.8250forward
CNT30319836Oryza nivaraAsparagus officinalis14.3720.883.13166forward
CNT30150970Oryza nivaraBrachypodium distachyon10.6551.0488.62123forward
CNT30578122Oryza nivaraOryza barthii37.454.82100432forward
CNT30582028Oryza nivaraEchinochloa crusgalli14.3723.3191.57166forward
CNT30604735Oryza nivaraOryza punctata15.9321.8397.28184forward
CNT30334895Oryza nivaraCynara cardunculus18.8753.5679.36218forward

Expression of CNT30117905

Peptides detected in this lncRNA

>peptide 1 (74 aa)
KAKGVTRIIPESQACIYTQNFAVTKSIHRPHIQVVYRFVYTQGYCRGKTRGMYIKRSRKDSCDEIHDEPRMFSR*

>peptide 2 (63 aa)
MPSLASAASPSLVYLPSCASELALARRSSAFCVASTSDCPPDKNCTKQQSINIIDQLYFQVYS*

>peptide 3 (57 aa)
MQYSFNFVHRSQPVTVTTHWLQCPRGTSSIAVAVVRSSSSSRFTVLIGLDRISRRSS*

>peptide 4 (43 aa)
MYIYAKLCSNQIDSQATHTGSIQIRLHTRLLQRQNTRYVYQTL*

Sequence

>CNT30117905
CAAGGCTAAGGGGGTAACCAGAATAATTCCAGAATCACAAGCATGTATATATACGCAAAACTTTGCAGTAACCAAATCGATTCACAGGCCACACATACAG
GTAGTATACAGATTCGTCTACACACAAGGTTATTGCAGAGGCAAAACACGAGGTATGTATATCAAACGCTCTAGAAAAGATTCATGTGATGAAATACATG
ATGAACCACGTATGTTCTCAAGGTAAAATTAATTAATGCAGTATAGTTTTAACTTTGTCCATCGATCTCAACCTGTAACTGTGACGACACACTGGCTACA
GTGCCCTCGAGGTACTAGCAGTATAGCAGTAGCTGTAGTACGTAGCAGCAGCAGCAGCAGGTTCACTGTCTTGATTGGATTGGATCGGATTAGTAGACGT
AGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGCTGGTGTACTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGGAGGAGCAG
CGCGTTCTGCGTCGCCTCCACCTCCGACTGCCCACCCGACAAGAACTGCACCAAACAACAATCAATCAATATTATCGATCAGCTCTACTTTCAGGTTTAT
TCTTGATCATCTACATCTGCAGAGACAGTTAGTAGTATCGTTGTGCAAGAAGAATCATGTCAGAATTAGCAGATCAACATTTGCAGTGGCAGTTTCTTGA
TCAACATTTCCAGTCAGGTTAAGCCATTTTGCAAGAAGAATCAGGTTAAGCTTTTAACATTTGCAGCGGCAGTTTCTTGATCAACATTCCAAGTCAGGTT
AAGCCATTTTGCAAGAAGTAAAGCAATATTAGTAGCTTCCTAAGCTTTAGTTTCAGTTTCTTTATCAGTGGTAGAATGCTGACCATGATGCCGGGGACGG
CAGGGGGGATCCTTCTGTGGAGGAGCTTGAGGGTGTAGTCAGATACTTGCTCAGGGGTGGCCCTGTCCTTGCACTCGGCACCGGGTGTCACCATGCTTGG
CTTGAGGAGGATGCCCTCGAACATCACATTGTTCTCGGCCATGTAGAAGAAGGTCTCCGCCCACACCTTCTGCGCCACCTCGAAGGTCCTGTCGATGCCA
TGCTCACCGTCGAGGAGGATCTCAGGCTCGACAATCGGCACCAGCCCGTTGTCCT