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Detailed information on CNT30557232


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697243Panicum halliiOryza sativa24.5112.6792.64163forward
CNT30677406Panicum halliiSetaria viridis32.4838.0392.13216forward
CNT30524157Panicum halliiSetaria italica35.9419.6197.49239forward
CNT30640893Panicum halliiNymphaea colorata26.6219.681.36177forward
CNT30314796Panicum halliiCorylus avellana26.3225.4783.43175forward
CNT30727836Panicum halliiCorchorus capsularis23.1641.480.52154forward
CNT30381342Panicum halliiManihot esculenta26.9222.1579.89179forward
CNT30223084Panicum halliiHordeum vulgare23.0119.6288.24153forward
CNT30390900Panicum halliiTriticum turgidum24.2123.2789.44161forward
CNT30588905Panicum halliiMusa acuminata20.1551.9482.09134forward
CNT30439071Panicum halliiAegilops tauschii19.438.6290.7129forward
CNT30255936Panicum halliiAvena sativa22.8641.390.79152forward
CNT30662744Panicum halliiTriticum dicoccoides35.6444.3891.14237forward
CNT30261343Panicum halliiBrassica rapa18.823.6382.4125forward
CNT30462400Panicum halliiSaccharum spontaneum35.9417.5690.38239forward
CNT30139084Panicum halliiLolium perenne24.5119.4591.41163forward
CNT3017013Panicum halliiZea mays25.1126.5995.21167forward
CNT30217689Panicum halliiKalanchoe fedtschenkoi11.5825.6789.6177forward
CNT3068263Panicum halliiLeersia perrieri24.5121.4293.25163forward
CNT30684371Panicum halliiTriticum urartu18.9534.3394.44126forward
CNT30338292Panicum halliiEragrostis tef35.9474.6992.47239forward
CNT30479625Panicum halliiArabidopsis halleri14.8929.9182.8399forward
CNT30367530Panicum halliiSorghum bicolor27.0752.9495180forward
CNT30371242Panicum halliiOryza glumipatula24.5124.8992.64163forward
CNT30481517Panicum halliiChara braunii10.2322.5288.2468forward
CNT30570222Panicum halliiVitis vinifera26.7735.6781.46178forward
CNT30150970Panicum halliiBrachypodium distachyon25.5670.5488.24170forward
CNT30104026Panicum halliiOryza rufipogon35.9427.0792.89239forward
CNT30582099Panicum halliiEchinochloa crusgalli25.4131.3591.72169forward
CNT30595262Panicum halliiEragrostis curvula35.9433.194.14239forward
CNT30334895Panicum halliiCynara cardunculus13.2321.6282.9588forward

Expression of CNT30557232

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPCSPSRRISGSTIGTSPLSCIHPCMVIG*

>peptide 2 (45 aa)
MAFRSARCRARRPEGSQAPRSAQARCPASIHVWLLVDPCSSSHGG*

Sequence

>CNT30557232
GTAGGAATTAGGTTCCATATATAAAACTGTATTATCGATTCATTGTACAGAGCGGGGCAACACGAAAACGAGCACACGGTAATTGATTAAGATCAACTTC
TTAATACAATCTCTCCCCGGTAGCCATGCATATATATATATATATATACACATAGCTAAGTAGTGGCGCAGCATCTCGATCATGGCGTGATGGCGAGAAT
ACGTGCTTATCTTGCTTAATCAGTAGTGTTGTATATATATCTCGTCGTCGTCGGAGTATAGCCGACGATCGCTTATTTAAATATTTAGTAGCTGTAGTTC
TTGACGAACATCCCCTCCTTGGCCTCGGCGGTCTCGCCGTCGGAGGTGTACTTGCCGAGCTGCGCCAGGGAGTTGGCCTTGGCGCGCAGCAGCAGCGCGT
CCTGCGCCGCCTTCACGTTCTCCGGCGCGCCGCCCCACGTCTTGAGGCAGGTGTTCTGCAGCGCCCGCGCGTAGGAGAAGGACACGTGCCACGGGTTGGG
CCCCTGGTTCATGGCGTTCAGGTCCGCTCGATGCCGTGCTCGCCGTCCAGAAGGATCTCAGGCTCCACGATCGGCACAAGCCCGTTGTCCTGCATCCATC
CATGTATGGTTATTGGTTGATCCATGCAGCAGCAGCCATGGTGGCTGATGATCCAAGAATGCTGC