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Detailed information on CNT30380779


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST001145, E-value = 7e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524487Manihot esculentaSetaria italica29.2113.6483.52182forward
CNT30200362Manihot esculentaPisum sativum25.8457.7185.71161forward
CNT30708796Manihot esculentaGlycine max23.630.7587.76147forward
CNT30297329Manihot esculentaTriticum aestivum12.5233.4887.1878forward
CNT30390900Manihot esculentaTriticum turgidum28.7325.8782.12179forward
CNT30237267Manihot esculentaBrassica oleracea50.8839.0980.13317forward
CNT30258087Manihot esculentaAvena sativa28.7338.2582.12179forward
CNT30663719Manihot esculentaTriticum dicoccoides12.5229.8985.978forward
CNT3075914Manihot esculentaBrassica juncea43.1844.3981.04269forward
CNT30263633Manihot esculentaBrassica rapa25.8426.9284.47161forward
CNT3068263Manihot esculentaLeersia perrieri21.6717.7481.48135forward
CNT30207455Manihot esculentaHelianthus annuus39.1736.9180.74244forward
CNT30348318Manihot esculentaEragrostis tef30.0224.8782.35187forward
CNT30479625Manihot esculentaArabidopsis halleri28.8954.3881.67180forward
CNT30570331Manihot esculentaVitis vinifera67.5871.3685.27421forward
CNT30334895Manihot esculentaCynara cardunculus30.6646.9382.72191forward

Expression of CNT30380779

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MSSGKYFEGLLHRRTIRAMGWELGSLHSSSGCGPILALCTRSDHAGLEKDTFKHDIVHSKIIEHLSPNLLSYFKGPVNPMLTIKQDLRLHNWDQ

Sequence

>CNT30380779
CCAGATGAATTCCCAGGTAACAATTGCATTGCAAAGGTAATGTATACACGCATCCTGGAAAACATGAAAATCCTATAAACAAAAGCAGTCTCCAAGGGCT
ACAAGAACAGACATAATGGTTTTTCGTTCAAGATGATGAACTATCCTCATCAAACATGAGTTCTTTTATACCACTGGTTGTAATAACCTAGTAAACATAG
CCCTTCACAAACATTCCTTTTTTGGCTTCCTCAGACTCTCCCTCGCCGGTGTATTTTCCAAGCTGCGCAAGAGAGTTGGCTTTTGCTCGGATAAGCAGGG
CCTCCTGAGCCGCCTTCACATTCTCAGGTGTGCCTCCCCATGTCTTCAGGCAAGTATTTTGAAGGGCTCTTGCATAGGAGAACGATACGTGCCATGGGTT
GGGAGCTTGGTTCATTGCATTCAAGTTCAGGGTGTGGCCCTATCCTTGCACTCTGCACCAGGAGTGACCATGCTGGGCTTGAGAAGGATACCTTCAAACA
TGACATTGTTCACAGCAAGATAATAGAACACCTCAGCCCAAACCTTCTGAGCTACTTCAAAGGTCCTGTCAATCCCATGCTCACCATCAAGCAAGATCTC
AGGCTCCACAATTGGGACCAACC