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Detailed information on CNT30371242


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 8e-36

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697243Oryza glumipatulaOryza sativa47.3324.09100310forward
CNT30677363Oryza glumipatulaSetaria viridis43.2143.2191.17283forward
CNT30524148Oryza glumipatulaSetaria italica25.0424.8993.9164forward
CNT30314796Oryza glumipatulaCorylus avellana24.2723.1480.5159forward
CNT30518741Oryza glumipatulaJuglans regia19.2425.484.13126forward
CNT30405165Oryza glumipatulaBeta vulgaris18.6323.2886.07122forward
CNT30297329Oryza glumipatulaTriticum aestivum16.3445.9290.65107forward
CNT30223084Oryza glumipatulaHordeum vulgare24.2720.3888.68159forward
CNT30390900Oryza glumipatulaTriticum turgidum43.6641.3388.81286forward
CNT30588905Oryza glumipatulaMusa acuminata19.3949.2281.89127forward
CNT30258087Oryza glumipatulaAvena sativa16.3422.8692.52107forward
CNT30662744Oryza glumipatulaTriticum dicoccoides25.531.2789.82167forward
CNT30462400Oryza glumipatulaSaccharum spontaneum24.8911.9888.34163forward
CNT30139084Oryza glumipatulaLolium perenne25.0419.5793.29164forward
CNT3017095Oryza glumipatulaZea mays25.0430.9492.07164forward
CNT30610790Oryza glumipatulaGossypium raimondii19.2441.1884.92126forward
CNT3068263Oryza glumipatulaLeersia perrieri25.0421.5598.17164forward
CNT30128108Oryza glumipatulaCorymbia citriodora17.7122.1887.93116forward
CNT30684371Oryza glumipatulaTriticum urartu11.620.7190.7976forward
CNT30338292Oryza glumipatulaEragrostis tef23.3647.8192.16153forward
CNT30367530Oryza glumipatulaSorghum bicolor25.1948.5393.33165forward
CNT30150970Oryza glumipatulaBrachypodium distachyon22.962.2489.33150forward
CNT30582099Oryza glumipatulaEchinochloa crusgalli24.8930.2493.25163forward
CNT30595262Oryza glumipatulaEragrostis curvula25.0422.7193.29164forward
CNT30604735Oryza glumipatulaOryza punctata22.4417.4497.28147forward
CNT30557232Oryza glumipatulaPanicum hallii24.8924.5192.64163forward

Expression of CNT30371242

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MPSLASAASPSLVYLPSCASELALARRSSASCAAFTFSGCPPHVLRV*

>peptide 2 (69 aa)
TRIIPETQACIYTQNFAVTKSIHRPHIQVVYRFVYTQGYCRGKTRGMYIKRSRKDSCDEIHDEPRMFSR*

>peptide 3 (57 aa)
MQYSFNFVHRSQPVTVTTHWLQCPRGTSSIAVAVVRSSSSSRFTVLIGLDRISRRSS*

>peptide 4 (51 aa)
QNNSRNTSMYIYAKLCSNQIDSQATHTGSIQIRLHTRLLQRQNTRYVYQTL*

Sequence

>CNT30371242
ACCAGAATAATTCCAGAAACACAAGCATGTATATATACGCAAAACTTTGCAGTAACCAAATCGATTCACAGGCCACACATACAGGTAGTATACAGATTCG
TCTACACACAAGGTTATTGCAGAGGCAAAACACGAGGTATGTATATCAAACGCTCTAGAAAAGATTCATGTGATGAAATACATGATGAACCACGTATGTT
CTCAAGGTAAAATTAATTAATGCAGTATAGTTTTAACTTTGTCCATCGATCTCAACCTGTAACTGTGACGACACACTGGCTACAGTGCCCTCGAGGTACT
AGCAGTATAGCAGTAGCTGTAGTACGTAGCAGCAGCAGCAGCAGGTTCACTGTCTTGATTGGATTGGATCGGATTAGTAGACGTAGTTCTTGACGAACAT
GCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGCTGGTGTACTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGGAGGAGCAGCGCGTCCTGCGCCGCC
TTCACGTTCTCCGGCTGCCCGCCCCACGTCTTGAGGGTGTAGTCAGATACTTGCTCAGGGGTGGCCCTGTCCTTGCACTCGGCACCGGGTGTCACCATGC
TTGGCTTGAGGAGGATGCCCTCGAACATCACATTGTTCTCGGCCATGTAGAAGAA