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Detailed information on CNT30139084


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 4e-149

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697427Lolium perenneOryza sativa38.928.784.05326forward
CNT30676761Lolium perenneSetaria viridis20.2952.6393.53170forward
CNT30523789Lolium perenneSetaria italica38.1925.2688.44320forward
CNT30640893Lolium perenneNymphaea colorata24.9423.1578.47209forward
CNT30314796Lolium perenneCorylus avellana17.1820.9684.03144forward
CNT30518741Lolium perenneJuglans regia26.6144.9678.92223forward
CNT30273043Lolium perenneChenopodium quinoa26.738.9779.91224forward
CNT30405165Lolium perenneBeta vulgaris19.5731.379.88164forward
CNT30297329Lolium perenneTriticum aestivum16.2358.3787.5136forward
CNT30390900Lolium perenneTriticum turgidum21.3625.8789.39179forward
CNT30586189Lolium perenneMusa acuminata19.3322.6982.72162forward
CNT30258087Lolium perenneAvena sativa23.9942.9587.56201forward
CNT3017013Lolium perenneZea mays35.6847.6189.3299forward
CNT30610790Lolium perenneGossypium raimondii26.8573.5379.56225forward
CNT30216367Lolium perenneKalanchoe fedtschenkoi27.6864.0983.19232forward
CNT3068263Lolium perenneLeersia perrieri19.6921.6892.73165forward
CNT30684371Lolium perenneTriticum urartu9.0720.7189.4776forward
CNT30345065Lolium perenneEragrostis tef28.1648.2686.86236forward
CNT30367530Lolium perenneSorghum bicolor19.5748.2491.46164forward
CNT30371242Lolium perenneOryza glumipatula19.5725.0493.29164forward
CNT30570332Lolium perenneVitis vinifera26.3737.0280.09221forward
CNT30104230Lolium perenneOryza rufipogon25.38.6190.09212forward
CNT30582099Lolium perenneEchinochloa crusgalli19.4530.2491.41163forward
CNT30117905Lolium perenneOryza nivara28.1620.4387.29236forward
CNT30595262Lolium perenneEragrostis curvula20.0523.2792.26168forward
CNT30604735Lolium perenneOryza punctata2120.8888.07176forward
CNT30557232Lolium perennePanicum hallii19.4524.5191.41163forward
CNT3040014Lolium perenneMarchantia polymorpha16.7146.5183.57140forward

Expression of CNT30139084

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MQNFAVTMHENPRVTHTGRQLYNLVEHNRERLISSCSS*

>peptide 2 (77 aa)
MPSLASAASPSLVYLPSWASELALARSSSASWAALTFSGRPPHVLRFSVASTSDCPPDRNMIPGTAGGTRRLRSLSV*

Sequence

>CNT30139084
TTTCCCAGTAAAAAAGAAAGATATATTAACCATTAATAATTAATTAGGTACGAACATGCAAAATTTTGCAGTAACCATGCATGAAAATCCACGGGTCACA
CATACAGGCAGGCAGCTTTACAATCTAGTGGAGCATAATCGAGAGCGATTAATTAGTAGCTGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGGC
CTCGCCGTCGCTGGTGTACTTGCCGAGCTGGGCGAGCGAGTTGGCCTTGGCGCGGAGCAGCAGCGCCTCCTGGGCCGCCTTGACGTTCTCCGGCCGGCCA
CCCCACGTCTTGAGGTTCAGCGTGGCCTCCACCTCCGACTGCCCTCCCGACAGGAACATGATCCCGGGCACGGCTGGCGGGACGCGGCGGCTGAGGAGCT
TGAGCGTGTAGTCGGCGACCTGCTCCGGGGTGGCCCTGTCCTTGCACTCGGCGCCGGGGGTGACCATGGAGGGCTTGAGCAGGATGCCCTCGAAGATGAC
GTTGTTCTGGGCCATGTAGTAGAAGGTCTCCGCCCACACCTTCTGCGCCACCTCGAAGGTGCGCTCGATGCCGTGCTCACCGTCCAGCAGGATCTCCGGC
TCCACGATGGGGACCAGGCCGTTGTCCTGGGAGATGGCGGCGTAGCGTGCCAGGCCCCAGGCGGCCTCCTTGACAGCGAGCTCGGAGGGCCCGTTGGGAA
TGCTCACCACGGTGCGCCACTTGGCGAAGCGGGCGCCCTGCTGGTAGTAGGCCGCCTCCCGGGAGGCGAGGCCGTCGAGGCCCTGGCACCAGGACTCGTC
GTTGGATCCGGTGAGCGGGACGAGGCCCTTGTCCACCT