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Detailed information on CNT3068263


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697243Leersia perrieriOryza sativa21.5512.7498.17164forward
CNT30676761Leersia perrieriSetaria viridis21.6851.0894.55165forward
CNT30524148Leersia perrieriSetaria italica21.6825.0494.55165forward
CNT30314796Leersia perrieriCorylus avellana20.522.7182.69156forward
CNT30518741Leersia perrieriJuglans regia20.1130.8584.31153forward
CNT30702712Leersia perrieriQuercus lobata20.3718.5281.94155forward
CNT30380779Leersia perrieriManihot esculenta17.7421.6781.48135forward
CNT30708796Leersia perrieriGlycine max20.3732.4381.29155forward
CNT30297329Leersia perrieriTriticum aestivum9.7231.7690.5474forward
CNT30390900Leersia perrieriTriticum turgidum20.2422.2591.56154forward
CNT30586189Leersia perrieriMusa acuminata19.8421.1587.42151forward
CNT30258087Leersia perrieriAvena sativa19.7132.0588.67150forward
CNT30662744Leersia perrieriTriticum dicoccoides20.2428.8491.56154forward
CNT3075602Leersia perrieriBrassica juncea14.3222.6181.65109forward
CNT30462400Leersia perrieriSaccharum spontaneum21.5512.0590.24164forward
CNT30139084Leersia perrieriLolium perenne21.6819.6992.73165forward
CNT3017095Leersia perrieriZea mays21.8131.3292.77166forward
CNT30610790Leersia perrieriGossypium raimondii18.9247.0683.33144forward
CNT30216367Leersia perrieriKalanchoe fedtschenkoi19.8441.7186.09151forward
CNT30207455Leersia perrieriHelianthus annuus19.4522.3981.08148forward
CNT30684371Leersia perrieriTriticum urartu9.9920.7192.1176forward
CNT30345068Leersia perrieriEragrostis tef21.4218.2391.41163forward
CNT30367530Leersia perrieriSorghum bicolor21.5548.2492.68164forward
CNT30371242Leersia perrieriOryza glumipatula37.3243.3690.14284forward
CNT30570125Leersia perrieriVitis vinifera14.8550.6783.19113forward
CNT30150970Leersia perrieriBrachypodium distachyon19.7162.2490150forward
CNT30104230Leersia perrieriOryza rufipogon37.3211.5390.14284forward
CNT30582099Leersia perrieriEchinochloa crusgalli21.4230.2493.87163forward
CNT30595262Leersia perrieriEragrostis curvula21.6822.8593.94165forward
CNT30604735Leersia perrieriOryza punctata34.9531.5583.83266forward
CNT30557232Leersia perrieriPanicum hallii21.4224.5193.25163forward
CNT30334895Leersia perrieriCynara cardunculus11.321.1383.7286forward

Expression of CNT3068263

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MYISNALGRPCDEYMRRNLTIPCLFLRQN*

>peptide 2 (40 aa)
MSVLKTKLINAVYFYFRPSIGSISTTCNCDDTLATVPSRY*

>peptide 3 (46 aa)
MDYGYIHKMFYLNNHKVDYIFVLKRNTKASHIHQVQSKHRIIHTQR*

>peptide 4 (58 aa)
MPSLASAASPSLVYLPSCASELALARSSSASCAAFTFSACPPHVLRRIPSNMTLFSAM*

Sequence

>CNT3068263
CCACGAGTTCCACTTTTTTTAGATAATGGATTATGGATACATCCATAAAATGTTCTACTTAAATAACCATAAAGTGGATTACATTTTTGTTTTGAAAAGG
AACACAAAAGCTAGCCACATACATCAAGTTCAGAGTAAACACAGAATAATCCATACGCAGCGATAGACAGGAGTCAGAGAAAGAGGCAAAACACAAGATA
TGTATATATCAAACGCTCTAGGAAGACCATGTGATGAATACATGAGGAGGAACTTAACCATTCCATGTCTGTTCTTAAGACAAAATTAATTAACGCAGTA
TACTTTTACTTTCGTCCATCGATCGGATCGATCTCAACAACCTGTAACTGTGACGACACACTGGCTACAGTGCCCTCAAGGTACTAGCAGTATCTGTAGT
ACGTAGCAGCAGCAACAGCTTCACTGATAGATTGAGAAATTAGTAGACGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGCTG
GTGTACTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGCAGCAGCAGCGCGTCCTGCGCCGCCTTCACGTTCTCCGCCTGCCCGCCCCACGTCTTGA
GGAGGATACCCTCGAACATGACATTGTTCTCGGCCATGTAGAAGAACACCTCGGCCCAGACCTTCTGCGCAACCTCGAAGGTCCTGTCGATGCCGTGCTC
ACCGTCCAGGAGGATTTCAGGCTCAACAATCGGCACCAGCCCGTTGTCCTAGCATTTCAAG