Detailed information on CNT30348318


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 7e-76

BLAST vs NONCODE:
NONMEST001145, E-value = 6e-16

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677085Eragrostis tefSetaria viridis33.2448.2691.6250forward
CNT30524487Eragrostis tefSetaria italica31.7817.9291.21239forward
CNT30640893Eragrostis tefNymphaea colorata54.3945.2980.2409forward
CNT30273043Eragrostis tefChenopodium quinoa32.059.6685.89241forward
CNT30380779Eragrostis tefManihot esculenta24.8730.0282.35187forward
CNT30405165Eragrostis tefBeta vulgaris17.422585.5131forward
CNT30390900Eragrostis tefTriticum turgidum26.628.990.5200forward
CNT30586189Eragrostis tefMusa acuminata31.6533.3383.19238forward
CNT306434Eragrostis tefZea mays31.7894.8487.03239forward
CNT30610790Eragrostis tefGossypium raimondii32.1879.0885.12242forward
CNT30365623Eragrostis tefSorghum bicolor28.9919.5390.83218forward

Expression of CNT30348318

Peptides detected in this lncRNA

>peptide 1 (46 aa)
SEALIIKYNIRFACILRCKICSNQIHISHRHLSTQVCPVKYRWQTR*

>peptide 2 (52 aa)
MPRVAGGILLWRSLRVYSATCSGVALSLLSAPGVTMLGLRRMPSNMTLFSAM*

Sequence

>CNT30348318
CTCCGAAGCTCTGATCATAAAATATAATATTCGATTCGCATGCATATTAAGATGCAAAATTTGCAGTAACCAAATCCACATTTCACATAGACATTTGTCT
ACTCAAGTTTGTCCCGTAAAATACAGATGGCAGACAAGGTAACAAGGCTCTAGAAATCATGTGAATGCAGTAAAATTCCAAGTTTCCCACTTAGTAGGGT
GGTAAAAACGCAGTGTATTTTGTCCATCTGAACATGTAACTGCCTACAGTGCCCTCAAGGTGCTAGCAGTGTACGGTATCATCTTAGTAGCTGTAGTTCT
TGACGAACATGTCCTCCTTGGCCGCCTCAGCCTCACCGTCGCTAGTGTACTTGCCGAGCTGAGCCAGGGAGTTGGCCTTGGCGCGCAGCAGCAGCGCGTC
CTGCGCCGCCTTGAAGTTCTCGGGCCGGCCGCCCCATGTCTTGAGGCAGGTGTTCTGGAGAGCCCTGGCGTAGGAGAAGGACACATGCCACGGGTTGCCG
GGGGGATCCTTCTGTGGAGGAGCTTGAGGGTGTACTCTGCCACTTGCTCAGGGGTGGCCTTGTCCTTGCTCTCAGCACCAGGGGTGACCATGCTGGGCTT
GAGGAGGATGCCCTCAAACATGACGTTGTTCTCAGCCATGTAGTAGAAGGTTTCGGCCCAAACTTTCTGCGCAACCTCGAAGGTCCTCTCGATGCCGTGC
TCACCATCCAGCAGGATTTCAGGCTCAACAATTGGCACCAGACCGTTGTCCT