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Detailed information on CNT30223084


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697243Hordeum vulgareOryza sativa20.3812.3588.68159forward
CNT30676761Hordeum vulgareSetaria viridis19.6247.3789.54153forward
CNT30524148Hordeum vulgareSetaria italica19.6223.2289.54153forward
CNT30390900Hordeum vulgareTriticum turgidum47.4453.4791.08370forward
CNT30439071Hordeum vulgareAegilops tauschii23.9755.9994.65187forward
CNT30255936Hordeum vulgareAvena sativa26.2855.7187.32205forward
CNT30664005Hordeum vulgareTriticum dicoccoides35.3862.0290.94276forward
CNT30136123Hordeum vulgareLolium perenne59.2385.2485.93462forward
CNT3017013Hordeum vulgareZea mays30.5137.982.77238forward
CNT30217689Hordeum vulgareKalanchoe fedtschenkoi8.3321.6795.3865forward
CNT30684371Hordeum vulgareTriticum urartu30.3864.5890.3237forward
CNT30348317Hordeum vulgareEragrostis tef19.3622.589.4151forward
CNT30367530Hordeum vulgareSorghum bicolor19.3644.4188.74151forward
CNT30371242Hordeum vulgareOryza glumipatula20.3824.2788.68159forward
CNT30481517Hordeum vulgareChara braunii11.0328.4888.3786forward
CNT30570192Hordeum vulgareVitis vinifera11.7921.284.7892forward
CNT30150970Hordeum vulgareBrachypodium distachyon20.2665.5691.14158forward
CNT30104230Hordeum vulgareOryza rufipogon20.386.4688.68159forward
CNT30582099Hordeum vulgareEchinochloa crusgalli18.4626.7290.28144forward
CNT30595262Hordeum vulgareEragrostis curvula19.6221.1988.24153forward
CNT30557232Hordeum vulgarePanicum hallii19.6223.0188.24153forward
CNT30334895Hordeum vulgareCynara cardunculus11.5422.1184.4490forward

Expression of CNT30223084

Peptides detected in this lncRNA

>peptide 1 (37 aa)
NRWINMLQEKLPCSKRALEIVHILTYLGWQTKATTTL*

>peptide 2 (33 aa)
MLSVHLFHQSWSRPVTTTTHWLAKVPSSCSRRY*

>peptide 3 (83 aa)
MFSLAAAASPSLVYLPSCARELALARSSSASCAAATFSGRPPHDTCHGFGAWFIAFRFSVASTSDCPPDKNCTTTEKRQQIWM*

Sequence

>CNT30223084
AACAGATGGATCAATATGCTCCAAGAAAAATTACCGTGTTCCAAACGGGCGCTTGAGATTGTTCATATACTTACTTACTTAGGGTGGCAAACAAAGGCAA
CAACAACGCTCTAGAGAAGAAAAAAAACATGCGAATACAGCAGTAAAACCATTCCAAAGTTTTTTTACTTAGGGTGGTAAAACACAGTATATGCTCTCCG
TCCATCTCTTCCATCAGAGCTGGTCTCGACCTGTAACAACGACGACACACTGGCTGGCTAAGGTGCCCTCAAGCTGCTCAAGGCGCTACTAGCACTCTCC
CTCCGTAGGTAGATTATGTAGATAGGACAGCTCGCCGACGGATCAGTAGCTGTAGTTCTTGACGAACATGTTCTCTTTGGCAGCTGCGGCCTCGCCGTCG
CTGGTGTACTTGCCGAGCTGCGCCAGGGAGTTGGCCTTGGCGCGCAGCAGCAGCGCCTCCTGCGCTGCCGCGACGTTCTCCGGCCGCCCGCCCCACGACA
CGTGCCACGGGTTCGGCGCCTGGTTCATCGCGTTCAGGTTCAGCGTCGCCTCCACCTCCGACTGTCCACCAGACAAGAACTGCACCACCACAGAAAAGAG
ACAACAAATTTGGATGTGAGCTTGTGCAGAACTAATGATTTGTTGATTTCTCAAGGCATGCTATTGTTGCACTTTTGAGTTACTAGTTACTATGTCACGA
TGCAAATTGGTTGTTGAGTATAGTGTCGTGTCAACATAATCTTATACGTATTCATGATTGTGCACTTAGGTTTGGGAGGG