« Back to Juglans regia search


Detailed information on CNT30518741


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 8e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Juglans regiaOryza sativa50.619.1582.47251forward
CNT30677085Juglans regiaSetaria viridis47.9845.9584.87238forward
CNT30524487Juglans regiaSetaria italica46.9817.4784.98233forward
CNT30640893Juglans regiaNymphaea colorata38.3121.0483.16190forward
CNT30314796Juglans regiaCorylus avellana50.636.5493.23251forward
CNT30702712Juglans regiaQuercus lobata31.0518.492.86154forward
CNT30273043Juglans regiaChenopodium quinoa51.8110.384.05257forward
CNT30381342Juglans regiaManihot esculenta40.9325.1287.68203forward
CNT30405165Juglans regiaBeta vulgaris34.8833.0282.66173forward
CNT30200362Juglans regiaPisum sativum50.689.9684.86251forward
CNT30710704Juglans regiaGlycine max46.7729.8287.07232forward
CNT30297329Juglans regiaTriticum aestivum28.0259.6684.17139forward
CNT30223861Juglans regiaHordeum vulgare24.1921.1385120forward
CNT30390900Juglans regiaTriticum turgidum45.3632.5181.33225forward
CNT30586189Juglans regiaMusa acuminata33.6723.3983.83167forward
CNT30541563Juglans regiaBrassica napus46.9834.9381.97233forward
CNT30237267Juglans regiaBrassica oleracea36.0922.0782.68179forward
CNT30258087Juglans regiaAvena sativa51.8154.9182.1257forward
CNT30663719Juglans regiaTriticum dicoccoides28.0253.2683.45139forward
CNT3075755Juglans regiaBrassica juncea30.2422.0386150forward
CNT30263618Juglans regiaBrassica rapa46.9833.1482.83233forward
CNT30139084Juglans regiaLolium perenne44.9626.6178.92223forward
CNT306434Juglans regiaZea mays42.7484.1379.25212forward
CNT30610790Juglans regiaGossypium raimondii48.7979.0885.95242forward
CNT30216367Juglans regiaKalanchoe fedtschenkoi36.0949.4582.12179forward
CNT3068263Juglans regiaLeersia perrieri30.8520.1184.31153forward
CNT30207455Juglans regiaHelianthus annuus21.5716.1985.05107forward
CNT30128108Juglans regiaCorymbia citriodora31.6530.0285.99157forward
CNT30345065Juglans regiaEragrostis tef48.5949.2882.99241forward
CNT30477126Juglans regiaArabidopsis halleri18.7523.0282.893forward
CNT30365623Juglans regiaSorghum bicolor43.9519.5382.11218forward
CNT30620107Juglans regiaCajanus cajan33.0611.889.63164forward
CNT30371242Juglans regiaOryza glumipatula25.419.2484.13126forward
CNT30570332Juglans regiaVitis vinifera50.8142.2184.92252forward
CNT30319836Juglans regiaAsparagus officinalis37.323.1879.46185forward
CNT3037127Juglans regiaCucumis melo35.4832.6581.82176forward
CNT30104026Juglans regiaOryza rufipogon41.5323.3383.5206forward
CNT30582028Juglans regiaEchinochloa crusgalli29.4420.5182.19146forward
CNT30117905Juglans regiaOryza nivara50.621.7382.47251forward
CNT30604735Juglans regiaOryza punctata34.2720.1781.76170forward
CNT30334895Juglans regiaCynara cardunculus45.1655.0481.7224forward
CNT30725414Juglans regiaLupinus angustifolius37.921.187.23188forward

Expression of CNT30518741

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MPFLASSDSPSPVYFPSWARELALARMGGFFCEGA*

Sequence

>CNT30518741
GGCTATTAAGTAGCTAAAAGTACATGTAATCATGAACAAAAATAGTTTCCACGCTTTAAAGCACAGTACAATCCATAGAAACTAGTATTTCATTCCTCCA
TCATCATCATCATCTATTGCTTTTGGCACAAACAGCTTGATTAGTAGACATAGCCCTTGACGAACATGCCTTTCTTGGCCTCTTCTGACTCTCCTTCACC
AGTGTACTTTCCAAGCTGGGCAAGAGAGTTGGCATTGGCACGGATGGGGGGATTCTTCTGTGAAGGAGCTTGAGGGTGTAGTCGGCGACTTGTTGAGGAG
TGGCCCTGTCCTTGCATTCGGCTCCAGGAGTCACCATACTAGGCTTGAGGAGAATACCCTCAAACAGGACATTGTTCTCAGCAAGGTAGAAGAAAACCTC
AGACCACACCTTCAGGGCAACCTCAAATGTCCTGTCAATGCCGTGCTCACCATCAAGCAGGATTTCTGGCTCCACAATTGGGACCAACCCATTGTC