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Detailed information on CNT30104026


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Oryza rufipogonOryza sativa37.625.32100332forward
CNT30677406Oryza rufipogonSetaria viridis24.5838.291.24217forward
CNT30524157Oryza rufipogonSetaria italica27.2919.7793.36241forward
CNT30640893Oryza rufipogonNymphaea colorata20.1619.7182.02178forward
CNT30314796Oryza rufipogonCorylus avellana24.3531.383.72215forward
CNT30518741Oryza rufipogonJuglans regia23.3341.5383.5206forward
CNT30273043Oryza rufipogonChenopodium quinoa24.358.6185.58215forward
CNT30727836Oryza rufipogonCorchorus capsularis17.5541.6781.94155forward
CNT30381342Oryza rufipogonManihot esculenta24.827.181.28219forward
CNT30405165Oryza rufipogonBeta vulgaris19.5933.0284.97173forward
CNT30297329Oryza rufipogonTriticum aestivum18.871.2489.76166forward
CNT30390900Oryza rufipogonTriticum turgidum22.6528.989.5200forward
CNT30258087Oryza rufipogonAvena sativa27.6352.1490.57244forward
CNT30662744Oryza rufipogonTriticum dicoccoides27.6345.6990.16244forward
CNT30462400Oryza rufipogonSaccharum spontaneum27.1817.6388.75240forward
CNT306434Oryza rufipogonZea mays25.7190.0888.55227forward
CNT30610790Oryza rufipogonGossypium raimondii23.3367.3283.98206forward
CNT30216367Oryza rufipogonKalanchoe fedtschenkoi18.0143.9286.16159forward
CNT30684371Oryza rufipogonTriticum urartu14.2734.3391.27126forward
CNT30338292Oryza rufipogonEragrostis tef26.0571.8891.74230forward
CNT30365623Oryza rufipogonSorghum bicolor26.1620.790.04231forward
CNT30570222Oryza rufipogonVitis vinifera27.1848.181.67240forward
CNT30595262Oryza rufipogonEragrostis curvula27.2933.3892.95241forward
CNT30557232Oryza rufipogonPanicum hallii27.0735.9492.89239forward
CNT30334895Oryza rufipogonCynara cardunculus21.9747.6778.87194forward

Expression of CNT30104026

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MPSLASAASPSLVYLPSCASELALARRSSASCAAFTFSGCPPHVLRHVFCSALAYENDTCHGLGPWFIAFRLSHFARSKAILVAS*

>peptide 2 (50 aa)
KSIHRPHIQVVYRFVYTQGYCRGKTRGMYIKRSRKDSCDEIHDEPRMFSR*

>peptide 3 (57 aa)
MQYSFNFVHRSQPVTVTTHWLQCPRGTSSIAVAVVRSSSSSRFTVLIGLDRISRRSS*

>peptide 4 (33 aa)
QIDSQATHTGSIQIRLHTRLLQRQNTRYVYQTL*

Sequence

>CNT30104026
CCAAATCGATTCACAGGCCACACATACAGGTAGTATACAGATTCGTCTACACACAAGGTTATTGCAGAGGCAAAACACGAGGTATGTATATCAAACGCTC
TAGAAAAGATTCATGTGATGAAATACATGATGAACCACGTATGTTCTCAAGGTAAAATTAATTAATGCAGTATAGTTTTAACTTTGTCCATCGATCTCAA
CCTGTAACTGTGACGACACACTGGCTACAGTGCCCTCGAGGTACTAGCAGTATAGCAGTAGCTGTAGTACGTAGCAGCAGCAGCAGCAGGTTCACTGTCT
TGATTGGATTGGATCGGATTAGTAGACGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGCTGGTGTACTTGCCGAGCTGCGCC
AGCGAGTTGGCCTTGGCGCGGAGGAGCAGCGCGTCCTGCGCCGCCTTCACGTTCTCCGGCTGCCCGCCCCACGTCTTGAGGCACGTGTTCTGCAGCGCCC
TCGCGTACGAGAACGACACGTGCCACGGGTTGGGCCCCTGGTTCATCGCGTTCAGGTTAAGCCATTTTGCAAGAAGTAAAGCAATATTAGTAGCTTCCTA
AGCTTTAGTTTCAGTTTCTTTATCAGTGGTAGAATGCTGACCATGATGCCGGGGACGGCAGGGGGGATCCTTCTGTGGAGGAGCTTGAGGGTGTAGTCAG
ATACTTGCTCAGGGGTGGCCCTGTCCTTGCACTCGGCACCGGGTGTCACCATGCTTGGCTTGAGGAGGATGCCCTCGAACATCACATTGTTCTCGGCCAT
GTAGAAGAAGGTCTCCGCCCACACCTTCTGCGCCACCTCGAAGGTCCTGTCGATGCCATGCTCACCGTCGAGGAGGATCTCAG