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Detailed information on CNT30610790


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Gossypium raimondiiOryza sativa79.0818.4683.06242forward
CNT30677085Gossypium raimondiiSetaria viridis78.146.1484.94239forward
CNT30524487Gossypium raimondiiSetaria italica75.1617.2485.22230forward
CNT30640893Gossypium raimondiiNymphaea colorata59.4820.1686.26182forward
CNT30536152Gossypium raimondiiEucalyptus grandis31.720.2983.5197reverse complement
CNT30314796Gossypium raimondiiCorylus avellana78.7635.0890.04241forward
CNT30518741Gossypium raimondiiJuglans regia79.0848.7985.95242forward
CNT30374484Gossypium raimondiiArabidopsis thaliana27.4519.7683.3384forward
CNT30273043Gossypium raimondiiChenopodium quinoa80.729.985.83247forward
CNT30405165Gossypium raimondiiBeta vulgaris55.5632.4483.53170forward
CNT30200362Gossypium raimondiiPisum sativum80.7288.5383247forward
CNT30710572Gossypium raimondiiGlycine max80.3955.0385.77246forward
CNT30297329Gossypium raimondiiTriticum aestivum43.4657.0884.21133forward
CNT30223861Gossypium raimondiiHordeum vulgare40.5221.8383.87124forward
CNT30390900Gossypium raimondiiTriticum turgidum62.4227.682.72191forward
CNT30586189Gossypium raimondiiMusa acuminata77.7833.3383.19238forward
CNT30541563Gossypium raimondiiBrassica napus54.5825.0483.83167forward
CNT30237267Gossypium raimondiiBrassica oleracea36.9313.9389.38113forward
CNT30258087Gossypium raimondiiAvena sativa62.4240.8182.72191forward
CNT30663719Gossypium raimondiiTriticum dicoccoides43.4650.9682.71133forward
CNT3075914Gossypium raimondiiBrassica juncea36.9318.6588.5113forward
CNT30263633Gossypium raimondiiBrassica rapa54.5827.9383.83167forward
CNT30139084Gossypium raimondiiLolium perenne73.5326.8579.56225forward
CNT306434Gossypium raimondiiZea mays73.288.8980.8224forward
CNT30216367Gossypium raimondiiKalanchoe fedtschenkoi51.6343.6582.28158forward
CNT3068263Gossypium raimondiiLeersia perrieri47.0618.9283.33144forward
CNT30128108Gossypium raimondiiCorymbia citriodora53.5931.3687.8164forward
CNT30348318Gossypium raimondiiEragrostis tef79.0832.1885.12242forward
CNT30365623Gossypium raimondiiSorghum bicolor71.2419.5383.94218forward
CNT30597047Gossypium raimondiiOryza meridionalis32.0310.0885.7198forward
CNT30371242Gossypium raimondiiOryza glumipatula41.1819.2484.92126forward
CNT30570332Gossypium raimondiiVitis vinifera76.1439.0385.84233forward
CNT30319836Gossypium raimondiiAsparagus officinalis31.0511.986.3295forward
CNT3037127Gossypium raimondiiCucumis melo54.5830.9883.83167forward
CNT30104026Gossypium raimondiiOryza rufipogon67.3223.3383.98206forward
CNT30582028Gossypium raimondiiEchinochloa crusgalli35.6215.3188.07109forward
CNT30117905Gossypium raimondiiOryza nivara79.0820.9583.06242forward
CNT30604735Gossypium raimondiiOryza punctata41.515.0784.25127forward
CNT30557055Gossypium raimondiiPanicum hallii39.2216.0680.83120forward
CNT30725414Gossypium raimondiiLupinus angustifolius57.5219.7586.93176forward

Expression of CNT30610790

Peptides detected in this lncRNA

>peptide 1 (30 aa)
WGDSPVEELESVISNLLWAGGILLWRSLRV*

Sequence

>CNT30610790
CTGGGGGGATTCTCCTGTGGAGGAGCTTGAGAGTGTAATCAGCAACTTGCTGTGGGCTGGGGGGATTCTCCTGTGGAGGAGCTTGAGGGTGTAATCAGCA
ACTTGCTGTGGGGTGGCCTTGTCTTTGCATTCAGCACCAGGAGTGACCATGCTGGGCTTGAGAAGGATGCCCTCAAACATGACATTGTTCTCAGCAAGGT
AGAAGAAAACCTCAGCCCAAACCTTCTGCGCTACTTCGAAAGTCCTATCAATTCCATGGTCACCATCAAGCAAGATTTCCGGCTCCACAATCGGGACCAG
TCCACT