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Detailed information on CNT30258087


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Avena sativaOryza sativa58.3320.8290.84273forward
CNT30677085Avena sativaSetaria viridis53.2148.0787.55249forward
CNT30524487Avena sativaSetaria italica51.0717.9287.45239forward
CNT30640893Avena sativaNymphaea colorata44.8723.2681.9210forward
CNT30314796Avena sativaCorylus avellana54.0636.8380.63253forward
CNT30518741Avena sativaJuglans regia54.9151.8182.1257forward
CNT30702712Avena sativaQuercus lobata30.1316.8582.98141forward
CNT30374484Avena sativaArabidopsis thaliana32.4835.7682.24152forward
CNT30273043Avena sativaChenopodium quinoa55.7710.4681.99261forward
CNT30380779Avena sativaManihot esculenta38.2528.7382.12179forward
CNT30405165Avena sativaBeta vulgaris29.9126.7283.57140forward
CNT30710704Avena sativaGlycine max42.0925.3279.7197forward
CNT30297329Avena sativaTriticum aestivum34.6269.5397.53162forward
CNT30223861Avena sativaHordeum vulgare27.3522.5497.66128forward
CNT30390900Avena sativaTriticum turgidum47.2231.9496.83221forward
CNT30586189Avena sativaMusa acuminata39.3225.7788.04184forward
CNT30541563Avena sativaBrassica napus45.7332.0880.37214forward
CNT30237267Avena sativaBrassica oleracea34.1919.7381.88160forward
CNT30663719Avena sativaTriticum dicoccoides34.1961.395.62160forward
CNT30263618Avena sativaBrassica rapa46.3730.8779.26217forward
CNT30139084Avena sativaLolium perenne42.9523.9987.56201forward
CNT306434Avena sativaZea mays42.7479.3789200forward
CNT30610790Avena sativaGossypium raimondii40.8162.4282.72191forward
CNT30216367Avena sativaKalanchoe fedtschenkoi39.150.5585.79183forward
CNT3068263Avena sativaLeersia perrieri32.0519.7188.67150forward
CNT30207455Avena sativaHelianthus annuus39.7428.1483.33186forward
CNT30345063Avena sativaEragrostis tef58.3399.2786.81273forward
CNT30365623Avena sativaSorghum bicolor48.520.3487.22227forward
CNT30620107Avena sativaCajanus cajan35.2611.8779.39165forward
CNT30597047Avena sativaOryza meridionalis20.9410.0892.8698forward
CNT30371242Avena sativaOryza glumipatula22.8616.3492.52107forward
CNT30481517Avena sativaChara braunii15.624.1786.373forward
CNT30570332Avena sativaVitis vinifera43.5934.1781.37204forward
CNT30319836Avena sativaAsparagus officinalis27.9916.4281.68131forward
CNT3037127Avena sativaCucumis melo40.8135.4479.58191forward
CNT30104026Avena sativaOryza rufipogon52.1427.6390.57244forward
CNT30582028Avena sativaEchinochloa crusgalli35.2623.1789.7165forward
CNT30117905Avena sativaOryza nivara58.3323.6490.84273forward
CNT30604735Avena sativaOryza punctata39.3221.8390.22184forward
CNT30557055Avena sativaPanicum hallii32.4820.3583.55152forward
CNT30334895Avena sativaCynara cardunculus38.2543.9882.12179forward
CNT30725414Avena sativaLupinus angustifolius35.2618.5280.61165forward

Expression of CNT30258087

Peptides detected in this lncRNA

>peptide 1 (35 aa)
GSAPGSSRSGSASPPPLTDRQTRTIPEQISKKHDM*

Sequence

>CNT30258087
CGGGTTCGGCGCCTGGTTCATCGCGTTCAGGTTCAGCGTCGCCTCCACCTCTGACTGACCGCCAGACAAGAACTATACCAGAACAAATAAGTAAAAAACA
TGATATGTAAGTATATATATTCTTCAACTATGAGAAACCAAGATGCTTGATGATATTTAAGGTGAGGGTAGAAGCTTGGAGGAGGTAGGGGTCTCACCAT
GATGCCGGGGACGGAAGGGGGGATCCTTCTCTGGAGGAGCTTCAGGGTGTAGCTGGACACTTCCTCAGGGGTGGCCCTGTCCTTGCACTCGGCACCAGGG
GTCACCATGCTTGGCTTCAGGAGGATGCCCTCAAACATGACGTTGTTCTGGGCCATGTAGAAGAACGTCTCAGCCCACACCTTCTGTGCGACCTCGAAGG
TCCTCTCGATGCCGTGCTCACCGTCGAGCATGATCTCAGGCTCCACAATCGGCACCAGCCCATTGTCC