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Detailed information on CNT30334895


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 3e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Cynara cardunculusOryza sativa53.5616.6379.36218forward
CNT30677085Cynara cardunculusSetaria viridis55.2843.4480.44225forward
CNT30524487Cynara cardunculusSetaria italica54.0516.4980.45220forward
CNT30639585Cynara cardunculusNymphaea colorata24.5741.6785100forward
CNT30314796Cynara cardunculusCorylus avellana55.7733.0484.14227forward
CNT30518741Cynara cardunculusJuglans regia55.0445.1681.7224forward
CNT30702712Cynara cardunculusQuercus lobata29.2414.2285.71119forward
CNT30273043Cynara cardunculusChenopodium quinoa55.779.0982.82227forward
CNT30727836Cynara cardunculusCorchorus capsularis34.1537.3785.61139forward
CNT30380779Cynara cardunculusManihot esculenta46.9330.6682.72191forward
CNT30405165Cynara cardunculusBeta vulgaris42.5133.0280.35173forward
CNT30494492Cynara cardunculusOlea europaea33.9127.4484.06138forward
CNT30710572Cynara cardunculusGlycine max40.2936.6981.71164forward
CNT30223084Cynara cardunculusHordeum vulgare22.1111.5484.4490forward
CNT30390900Cynara cardunculusTriticum turgidum43.9825.8780.45179forward
CNT30586189Cynara cardunculusMusa acuminata28.516.2582.76116forward
CNT30541563Cynara cardunculusBrassica napus25.5515.5986.54104forward
CNT30237267Cynara cardunculusBrassica oleracea25.5512.8286.54104forward
CNT30145300Cynara cardunculusMedicago truncatula33.1761.9383.7135forward
CNT30439071Cynara cardunculusAegilops tauschii27.0332.9382.73110forward
CNT30258087Cynara cardunculusAvena sativa43.9838.2582.12179forward
CNT30261343Cynara cardunculusBrassica rapa22.3617.290.1191forward
CNT30462400Cynara cardunculusSaccharum spontaneum33.6610.0782.48137forward
CNT30136123Cynara cardunculusLolium perenne22.616.9782.6192forward
CNT307142Cynara cardunculusZea mays24.828.0786.14101forward
CNT30610723Cynara cardunculusGossypium raimondii35.6328.184.14145forward
CNT30216367Cynara cardunculusKalanchoe fedtschenkoi43.9849.4581.56179forward
CNT3068263Cynara cardunculusLeersia perrieri21.1311.383.7286forward
CNT30207455Cynara cardunculusHelianthus annuus98.7760.8285.32402forward
CNT30345066Cynara cardunculusEragrostis tef33.4224.6483.09136forward
CNT30479625Cynara cardunculusArabidopsis halleri17.4421.4590.1471forward
CNT30365623Cynara cardunculusSorghum bicolor24.829.0584.16101forward
CNT30620107Cynara cardunculusCajanus cajan34.410.0785140forward
CNT30481517Cynara cardunculusChara braunii29.7340.0784.3121forward
CNT30570332Cynara cardunculusVitis vinifera55.2837.6982.67225forward
CNT30319836Cynara cardunculusAsparagus officinalis40.2920.5581.71164forward
CNT3037127Cynara cardunculusCucumis melo40.2930.4381.71164forward
CNT30104026Cynara cardunculusOryza rufipogon47.6721.9778.87194forward
CNT30117905Cynara cardunculusOryza nivara53.5618.8779.36218forward
CNT30595262Cynara cardunculusEragrostis curvula21.8712.3383.1589forward
CNT30604735Cynara cardunculusOryza punctata38.5718.6279.62157forward
CNT30557232Cynara cardunculusPanicum hallii21.6213.2382.9588forward
CNT30724556Cynara cardunculusLupinus angustifolius36.3614.9983.11148forward

Expression of CNT30334895

Peptides detected in this lncRNA

>peptide 1 (34 aa)
RVFLPMSSSKCSEEHVRMRTTRATGSGFGSLRSS*

Sequence

>CNT30334895
CGGGTCTTCCTCCCCATGTCTTCAAGCAAGTGTTCTGAAGAGCACGTGCGTATGAGAACGACACGTGCCACGGGTTCGGGCTTTGGTTCATTGCGTTCAA
GTTGAGTGTAGCCTCCACCTCAGATTGCCCACCGGACAAAAACTGCATTTGAGGAACTGCTGGTGGGATTCTTTGTTGGAGGAGCTTGAGAGTGTAATCC
GCGACCTGTTGAGGTGTGGCTCTTTCCTTGCAATCGGCCCCAGGGGTAACCATGCTCGGCTTCAATAGGATGCCTTCAAAGAGAACATTGTTCTGAGCAA
GGTAAAAGAACACCTCAGCCCACACCTGCTTTGCAACCTCAAAAGTCCTGTCGATTCCATGCTCACCGTCTAGTAAAATCTCAGGCTCGACAATTGGGAC
CAAACCG