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Detailed information on CNT30684371


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 1e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677406Triticum urartuSetaria viridis34.3322.1888.1126forward
CNT30524148Triticum urartuSetaria italica34.3319.1293.65126forward
CNT30314796Triticum urartuCorylus avellana23.4312.5288.3786forward
CNT30223084Triticum urartuHordeum vulgare65.430.7790.42240forward
CNT30390900Triticum urartuTriticum turgidum64.5834.2599.58237forward
CNT30439071Triticum urartuAegilops tauschii50.4155.3991.89185forward
CNT30255936Triticum urartuAvena sativa92.9292.6687.68341forward
CNT30664005Triticum urartuTriticum dicoccoides10082.4787.47367forward
CNT30462400Triticum urartuSaccharum spontaneum34.069.1888125forward
CNT30139084Triticum urartuLolium perenne20.719.0789.4776forward
CNT307142Triticum urartuZea mays22.626.6393.9883forward
CNT3068263Triticum urartuLeersia perrieri20.719.9992.1176forward
CNT30338292Triticum urartuEragrostis tef34.3339.3889.68126forward
CNT30479625Triticum urartuArabidopsis halleri18.5320.5485.2968forward
CNT30365786Triticum urartuSorghum bicolor34.0648.2688125forward
CNT30371242Triticum urartuOryza glumipatula20.7111.690.7976forward
CNT30570331Triticum urartuVitis vinifera22.8914.2483.3384forward
CNT30319836Triticum urartuAsparagus officinalis23.7110.983.9187forward
CNT30150970Triticum urartuBrachypodium distachyon22.0733.6192.5981forward
CNT30104026Triticum urartuOryza rufipogon34.3314.2791.27126forward
CNT30582099Triticum urartuEchinochloa crusgalli22.3415.2189.0282forward
CNT30595262Triticum urartuEragrostis curvula33.2416.992.62122forward
CNT30557232Triticum urartuPanicum hallii34.3318.9594.44126forward

Expression of CNT30684371

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MFSLASAASPSLLALARSSSASCAAATFSGRPPHVLRQVFCSARA*

>peptide 2 (32 aa)
VYLGWQNTVYTLCPSLPSELVSTCNNDDPLAG*

Sequence

>CNT30684371
GTTTACTTAGGGTGGCAAAACACAGTATATACTCTCTGTCCATCTCTTCCATCAGAGCTGGTCTCGACCTGTAACAACGACGACCCACTGGCTGGCTAAG
GTGCCCTCAAGCTGCTCAAGGCGCTACTGGCTGACAGTGATGCGGTAGATTATTAGATAGACAGCTCGCCGACGGATCAGTAGCTGTAGTTCTTGACGAA
CATGTTCTCGCTGGCTTCCGCGGCCTCGCCGTCGCTGTTGGCCTTGGCGCGCAGCAGCAGCGCCTCCTGCGCCGCGGCCACGTTCTCCGGCCGCCCGCCC
CACGTCTTGAGGCAGGTGTTCTGCAGCGCCCGCGCGTAGGAGAAGGACACGTGCCACGGGTTCGGCG