« Back to Setaria viridis search


Detailed information on CNT30677363


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 4e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697243Setaria viridisOryza sativa57.429.2290.69376forward
CNT30405165Setaria viridisBeta vulgaris39.8549.8182.38261forward
CNT30390900Setaria viridisTriticum turgidum56.6453.6188.95371forward
CNT30371242Setaria viridisOryza glumipatula43.2143.2191.17283forward

Expression of CNT30677363

Peptides detected in this lncRNA

>peptide 1 (41 aa)
GGPPVFWKLGICTALTWVKPELFRPTPLVPAYHRPHKVVTM*

Sequence

>CNT30677363
TGGAGGTCCTCCTGTTTTCTGGAAATTGGGAATTTGCACTGCTCTTACTTGGGTCAAGCCTGAGCTGTTCAGACCAACACCTCTAGTACCAGCATACCAC
AGGCCACATAAGGTAGTAACCATGTGAATGCGAACCTGCAGTACCAGCATACCGAGGATAGTAAAATCGCAGTGTACTCTTTGTCCCATCTGAACCTGTA
ATATGGCACACTGCCTACAGTGTGCCCTCGAGGTAGGTACTAGGCTACTAGCAGCGCGTATTAGTAGACGTAGTTCTTGACGAACATTCCCTCCTTGGCC
TCGGCGGCCTCGCCGTCGGAGGTGTACTTGCCGAGCTGCGCCAGGGAGTTGGCCTTGGCGCGGAGCAGCAGAGCATCCTGAGCCGCCTTCACGTTCTCTG
GCCGGCCGCCCCATGTCTTGAGGGTGTAGTCGGCAACTTGCTGAGGGGTGGCCCTGTCCTTGCACTCAGCACCAGGGGTGACCATGCTGGGCTTGAGGAG
GATGCCCTCGAATATCACATTGTTCTCAGCCAGGTAGTAGAAGGTCTCGGCCCACACCTTCTGTGCAACCTCGAAGGTCCTCTCGATGCCGTGCTCACCG
TCAAGAAGGATTTCAGGCTCCACAATTGGCACCAGGCCATGGACCATTGGGGATG