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Detailed information on CNT30439071


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676451Aegilops tauschiiSetaria viridis24.8518.9593.9883forward
CNT30524157Aegilops tauschiiSetaria italica38.9210.6692.31130forward
CNT30639585Aegilops tauschiiNymphaea colorata28.1439.1784.0494forward
CNT30314796Aegilops tauschiiCorylus avellana31.7415.4387.74106forward
CNT30381342Aegilops tauschiiManihot esculenta27.8411.5183.8793forward
CNT30708950Aegilops tauschiiGlycine max29.0425.1384.5497forward
CNT30223084Aegilops tauschiiHordeum vulgare55.9923.9794.65187forward
CNT30390900Aegilops tauschiiTriticum turgidum55.3926.7391.35185forward
CNT30541563Aegilops tauschiiBrassica napus23.3511.6991.0378forward
CNT30237226Aegilops tauschiiBrassica oleracea30.8422.7488.35103forward
CNT30255936Aegilops tauschiiAvena sativa39.2235.694.66131forward
CNT30664005Aegilops tauschiiTriticum dicoccoides10075.0691.62334forward
CNT3075914Aegilops tauschiiBrassica juncea23.3512.8791.0378forward
CNT30261343Aegilops tauschiiBrassica rapa20.0612.6789.5567forward
CNT30462400Aegilops tauschiiSaccharum spontaneum38.629.4886.05129forward
CNT30136123Aegilops tauschiiLolium perenne27.5416.9795.6592forward
CNT307142Aegilops tauschiiZea mays61.6816.4586.41206forward
CNT30217689Aegilops tauschiiKalanchoe fedtschenkoi29.3432.6791.8498forward
CNT30684371Aegilops tauschiiTriticum urartu55.3950.4191.89185forward
CNT30338292Aegilops tauschiiEragrostis tef33.533592.86112forward
CNT30365786Aegilops tauschiiSorghum bicolor25.1532.4388.184forward
CNT30481517Aegilops tauschiiChara braunii26.9529.888.8990forward
CNT30570222Aegilops tauschiiVitis vinifera28.4419.0484.2195forward
CNT30319836Aegilops tauschiiAsparagus officinalis32.3413.5382.41108forward
CNT30150970Aegilops tauschiiBrachypodium distachyon17.9624.991.6760forward
CNT30104100Aegilops tauschiiOryza rufipogon64.0739.1989.25214forward
CNT30581883Aegilops tauschiiEchinochloa crusgalli27.8416.3783.8793forward
CNT30595262Aegilops tauschiiEragrostis curvula41.6219.2589.21139forward
CNT30557232Aegilops tauschiiPanicum hallii38.6219.490.7129forward
CNT30334895Aegilops tauschiiCynara cardunculus32.9327.0382.73110forward

Expression of CNT30439071

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MFSLASAASPSLRLLRRGHVLRPPTPRLEAGVLERPRVGEGHVPRVRRLVHRVQVQRRLHL

Sequence

>CNT30439071
GAGCTGGTCTCGACCTGTAACAACGACGACACACTGGCTGGCTAAGGTGCCCTCAAGCTGCTCAAGGCGCTACTAGCACTCTCCCTCCATAGGTAGATAA
TTAGATAGATAGCTCGCCGACGGATCAGTAGCTGTAGTTCTTGACGAACATGTTCTCGCTGGCTTCCGCGGCCTCGCCGTCGCTGCGCCTCCTGCGCCGC
GGCCACGTTCTCCGGCCGCCCACCCCACGTCTTGAGGCAGGTGTTCTGGAGCGCCCGCGCGTAGGAGAAGGACACGTGCCACGGGTTCGGCGCCTGGTTC
ATCGCGTTCAGGTTCAGCGTCGCCTCCACCTCCG