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Detailed information on CNT30273043


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697376Chenopodium quinoaOryza sativa10.5420.0684.03263forward
CNT30677085Chenopodium quinoaSetaria viridis10.0648.4684.46251forward
CNT30524487Chenopodium quinoaSetaria italica13.6625.5682.4341forward
CNT30640893Chenopodium quinoaNymphaea colorata9.0525.0383.19226forward
CNT30314796Chenopodium quinoaCorylus avellana10.1836.9787.01254forward
CNT30518741Chenopodium quinoaJuglans regia10.351.8184.05257forward
CNT30702585Chenopodium quinoaQuercus lobata3.8941.9987.6397forward
CNT30377016Chenopodium quinoaArabidopsis thaliana3.6925.2786.9692forward
CNT30381329Chenopodium quinoaManihot esculenta8.6924.887.56217forward
CNT30405165Chenopodium quinoaBeta vulgaris6.9333.0294.22173forward
CNT30632098Chenopodium quinoaVigna unguiculata6.3321.2482.91158forward
CNT30200362Chenopodium quinoaPisum sativum10.1891.0482.68254forward
CNT30710572Chenopodium quinoaGlycine max10.1456.684.58253forward
CNT30297329Chenopodium quinoaTriticum aestivum6.3367.8184.18158forward
CNT30223861Chenopodium quinoaHordeum vulgare4.7320.7785.59118forward
CNT30390900Chenopodium quinoaTriticum turgidum7.4126.7384.32185forward
CNT30586189Chenopodium quinoaMusa acuminata10.0235.0180250forward
CNT30538767Chenopodium quinoaBrassica napus3.3720.4985.7184forward
CNT30234855Chenopodium quinoaBrassica oleracea3.8932.4485.5797forward
CNT30258087Chenopodium quinoaAvena sativa10.4655.7781.99261forward
CNT30663719Chenopodium quinoaTriticum dicoccoides6.3360.5482.91158forward
CNT3075602Chenopodium quinoaBrassica juncea3.8920.1283.5197forward
CNT30263618Chenopodium quinoaBrassica rapa10.0635.779.28251forward
CNT30139084Chenopodium quinoaLolium perenne8.9726.7379.91224forward
CNT3017095Chenopodium quinoaZea mays8.5340.1978.4213forward
CNT30610790Chenopodium quinoaGossypium raimondii9.980.7285.83247forward
CNT30216367Chenopodium quinoaKalanchoe fedtschenkoi7.1349.1780.9178forward
CNT30207455Chenopodium quinoaHelianthus annuus8.6532.6881.94216forward
CNT30128108Chenopodium quinoaCorymbia citriodora6.5731.3684.76164forward
CNT30683741Chenopodium quinoaTriticum urartu3.8522.1788.5496forward
CNT30348318Chenopodium quinoaEragrostis tef9.6632.0585.89241forward
CNT30477126Chenopodium quinoaArabidopsis halleri3.6922.7788.0492forward
CNT30365475Chenopodium quinoaSorghum bicolor8.3726.3685.65209forward
CNT30570332Chenopodium quinoaVitis vinifera10.5844.2282.2264forward
CNT3029174Chenopodium quinoaTheobroma cacao8.7321.7383.49218forward
CNT30319836Chenopodium quinoaAsparagus officinalis7.4923.4379.14187forward
CNT3036858Chenopodium quinoaCucumis melo8.2536.1482.52206forward
CNT30104026Chenopodium quinoaOryza rufipogon8.6124.3585.58215forward
CNT30117905Chenopodium quinoaOryza nivara9.720.9584.71242forward
CNT30604735Chenopodium quinoaOryza punctata6.8120.1783.53170forward
CNT30551796Chenopodium quinoaOryza brachyantha9.5830.5282.85239forward
CNT30334895Chenopodium quinoaCynara cardunculus9.0955.7782.82227forward
CNT30724556Chenopodium quinoaLupinus angustifolius9.2523.481.82231forward
CNT3040010Chenopodium quinoaMarchantia polymorpha4.8126.3781.67120forward

Expression of CNT30273043

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MTKKVCFMAVNHIIRAFKLKYTNFRSVINLH*

>peptide 2 (30 aa)
MCNLLISIFIFFLIDIKKYKWLRICIGKHD*

>peptide 3 (64 aa)
MLKRTEQTSQKICKVLSLLLANSTTQANQCFSTTNLYNSSNACYHNMSCLRGCHASASDVPPCG*

>peptide 4 (35 aa)
MGHWECSQQYACRKSTIQILLCEYSHLTSKYIVIL*

>peptide 5 (32 aa)
MEGRRRVWPLTKSDLSRTGEVFRREAEAIFLQ*

Sequence

>CNT30273043
AGAAAATTATGTCATTTCAAACCCTTGTTAAAAGCAATAACCAATTTCCAAGAGCCAAGGTAAATCTCATTAGTAGCTGAACATCTTATTAAAACTTGAG
TATAAGGTACATACAATTTAAGTAATGACCAAAAAAGTCTGTTTCATGGCCGTTAATCACATCATTAGGGCCTTCAAACTTAAATACACAAATTTTAGGT
CCGTGATCAACCTCCATTAAAATAAACAAACTTAATCTAATAAGAACTCCCACTCGGTAATAATCTTCTTAGTAAGTGTAGCCCTTGACAAACATGCCCT
TCTTGGCCTCCTCGGACTCACCCTCACCAGTGTACTTACCGAGCTGAGCCAAAGAGTTGGACTTGGCCCGTTGCAACAGGGCATCTTGAGCAGCCTTCAC
GTTCTCGGGCCTTCCACCCCAGGGACGGATGGGGGGATTCTCCTGTGGAGGAGCTTGAGGGTGTAATCAGCAACTTGATCAGGGGTGGCCCTTTCCTTGC
ACTCAGCACCTGGGGTAACCATGCTTGGCTTAAGAAGGATACCCTCAAAGAGCACATTGTTCTCTGCCATGTAGTAGAACACTTCGGCCCAAACCTTCTG
AGCAACCTCGAATGTCCTGTCGATTCCATGCTCACCATCAAGCAAGATCTCTGGCTCAACAATTGGGACCAATCCATTGTCCTATATACAACATATAATT
TATAAGAACCAATATAGGTGAAATAGTCTGTTAAAAAAACAAAGTTTAGGTTCTGGTTTTTCATTGCTTACTTGGGTGATAGCAGCGTAGCGAGCAAGAC
CCCAAGCAGCTTCCTTCACTGCCAAGGCAGATGGGCCATTGGGAATGCTCACAACAGTACGCCTGTAGAAAATCGACAATCCAAATTTTGTTGTGTGAAT
ATTCACATCTAACTAGCAAATATATAGTCATTCTTTGAGTAAGATCATATTATGTACCATTTGGCAAAGCGGGCACCCTGCTGGTAGTAAGCAGCAGAGC
GGGAAGCAAGACCATCAAGACCTTGGCACCATGACTCATCATTTGAACCAGCAAGTGGCACCAAACCCTGTAAATTAGTACATTATCGATGTTCACATAT
CAATATTACACTAGCATACTTACTTTCCTGCTCTAATTTAATCTGCATGTAAGAGTGTGGCAAGATATCGAACCTTGTCAACTTTGATACCGGGAACAAT
GCCCTGCTCAATGAGGACATCAACCATTTTCTTGCCATCAGTGGTGGATTGGTAAAGAGTCTCTTCAAAGAGGATAGCACCAGAGATGTACTGACCAAGG
CCTGGGGCACTGATAAGAAGGGTACGGTAGGCTTGGCGGTTAGCCTCTGTGTTCTCTAGACCAATTGAGGCAAGACGTTTCCCACAGGTGGCATTCGACT
CATCCATGGCCAAGATTCCACGGCCAGGTGATGCCACAGTTTTCTGCATACAACCCCCACAAATAAACAACTTTATTTGCTTCTGAATTCTTTTTTTACT
TATCTTACAGTGGACAAGTATAACTAGTATTTACCATAAAATAAAACACTACAATTTTTCAACATGGTTAACTTTTAAGGTGGTCAAATCATTAACTTAA
GTGTCAGAGAATCATAGAATCCACACTTAGATACTTCTCCCGGTCATTATATACATCTACAAAAACTCTTTTTTTTCTTCACCTTTATTACTTCTATTTC
GCTATAATATTCTATTTTTATACTACCTCGGTTTTTTATTAGTTGCTATGTTTCTTTTATATAGTGTACACTATCCATATAATCTACTTAGACTCTACTC
TGTGATAAATAAAAACAAAGTCATATGAAATCTTGTTAGATTAGATTAATATCTATGTGTAATCTATTAATATCAATTTTTATTTTTTTCCTTATTGATA
TTAAAAAGTATAAATGGTTGAGAATATGCATTGGCAAACATGACTAAAGTAACATAGCGACTAATTAAAAACAGAGGAAGTTAATGTTTAGAATCATAGG
CATAAATTTCTGAAAACAACCATAATTATATACTGTAGCTAACTGAAGTACATGTGCAAACATCAAAACAATTTATCAGTAAAGAGATAGAAAAGGCTAA
CTTAACGTACCGCGGTCTTAACAAGCTCATCGGCATAGGAGCTGGCACGGACAGTCAAAGACGATGGAGCCGAGGGAGTGAACCTGACACCAGCAATGGA
AGGAAGGCGGAGGGTCTGGCCCTTGACAAAGTCAGACTTGTCAAGGACTGGTGAGGTCTTCAGAAGAGAAGCTGAGGCCATTTTTCTTCAATGAACTGTG
TATGCTAAAGAGAACAGAACAGACTAGCCAAAAGATATGCAAAGTCTTATCCCTCCTCTTAGCAAACTCTACCACACAGGCTAATCAATGCTTCAGTACT
ACAAATTTATATAACTCTAGTAATGCATGTTATCATAATATGTCTTGCTTGAGAGGCTGTCATGCTTCGGCCAGTGACGTACCGCCATGTGGATGA