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Detailed information on CNT30462400


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697329Saccharum spontaneumOryza sativa8.8922.9290.08121forward
CNT30677406Saccharum spontaneumSetaria viridis16.3939.2689.69223forward
CNT30524157Saccharum spontaneumSetaria italica20.5722.9789.29280forward
CNT30640885Saccharum spontaneumNymphaea colorata12.9321.7384.66176forward
CNT30702712Saccharum spontaneumQuercus lobata15.7225.5782.24214forward
CNT30377016Saccharum spontaneumArabidopsis thaliana6.3223.6386.0586forward
CNT30727836Saccharum spontaneumCorchorus capsularis16.0958.8781.74219forward
CNT30381342Saccharum spontaneumManihot esculenta16.8328.3481.66229forward
CNT30708916Saccharum spontaneumGlycine max11.1763.0780.92152forward
CNT30390900Saccharum spontaneumTriticum turgidum11.8323.2786.34161forward
CNT30538163Saccharum spontaneumBrassica napus16.3145.0380.63222forward
CNT30237267Saccharum spontaneumBrassica oleracea16.3127.3780.18222forward
CNT30439071Saccharum spontaneumAegilops tauschii9.4838.6286.05129forward
CNT30255936Saccharum spontaneumAvena sativa11.2441.5884.97153forward
CNT30662744Saccharum spontaneumTriticum dicoccoides20.4352.0685.97278forward
CNT3075914Saccharum spontaneumBrassica juncea16.3136.6380.18222forward
CNT30261343Saccharum spontaneumBrassica rapa11.6129.8781.01158forward
CNT30136123Saccharum spontaneumLolium perenne8.8922.3292.56121forward
CNT3017013Saccharum spontaneumZea mays12.2726.5988.62167forward
CNT30610723Saccharum spontaneumGossypium raimondii16.8344.3880.35229forward
CNT30217689Saccharum spontaneumKalanchoe fedtschenkoi7.053286.4696forward
CNT3068263Saccharum spontaneumLeersia perrieri12.0521.5590.24164forward
CNT30207455Saccharum spontaneumHelianthus annuus11.8324.3679.5161forward
CNT30684371Saccharum spontaneumTriticum urartu9.1834.0688125forward
CNT30345066Saccharum spontaneumEragrostis tef21.0151.8191.61286forward
CNT30477126Saccharum spontaneumArabidopsis halleri6.3221.2984.8886forward
CNT30365038Saccharum spontaneumSorghum bicolor37.3392.5394.88508forward
CNT30371242Saccharum spontaneumOryza glumipatula11.9824.8988.34163forward
CNT30481517Saccharum spontaneumChara braunii8.2337.0981.25112forward
CNT30570222Saccharum spontaneumVitis vinifera16.3144.4984.23222forward
CNT30150970Saccharum spontaneumBrachypodium distachyon12.4970.5485.88170forward
CNT30104026Saccharum spontaneumOryza rufipogon17.6327.1888.75240forward
CNT30582047Saccharum spontaneumEchinochloa crusgalli21.4545.4885.96292forward
CNT30595262Saccharum spontaneumEragrostis curvula18.334.4988.35249forward
CNT30557232Saccharum spontaneumPanicum hallii17.5635.9490.38239forward
CNT30334895Saccharum spontaneumCynara cardunculus10.0733.6682.48137forward

Expression of CNT30462400

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MPSLAAAASPSLVYLPSCARELALARSSSASCAAFTFSGLPPHVLRQVFCSALA*

>peptide 2 (42 aa)
MTHATGWGSGSWRSGSGSPQPQTAHQTGTACIAQIITVQNIKR

>peptide 3 (32 aa)
MPRVGALVHGVQVLGRLNLRLPTRQELHALHK*

>peptide 4 (31 aa)
MAFRFWVASTSDCPPDRNCMHCTNNYSSEHQK

>peptide 5 (29 aa)
GLAAQGTTTTHFETSQPRCQHEDSNRTAV*

Sequence

>CNT30462400
GGCCTAGCTGCACAAGGGACAACCACCACTCATTTTGAAACCTCCCAACCAAGATGCCAACATGAGGATTCCAACCGTACAGCAGTATAACATTCTGGAA
GATCATTTGTGATTACAATCTTCAAGGAATTTTTTTTCTCGTGGGCTTGCAAAAGACAACTGACATTGTCTGATGTCATATCATAAAAATTAATAAACCA
GCTAGGAGATAATAGAGAAAGGAAAATACAAATATAATATTTTGAATAATAAAAGTTGTTGCGCTCAGTAAATGGGAGAAAGGAAATTATAACAATTGCA
AAAAAAAAAAACTGTACCAGCGAGCAAATTGGCCAAATGGCACCTATTGATCTCCATGACAACGAAAGAAACAAAGTGCCATGAAAGTGATTTCACTATT
GAATAACAAGAGCTGAACAGTGACAAAATGTTTACAAGAGCAAATTGGCCACACATGGCACCTATTGATCTCCATGACAGCGAGAGAAACAAAGTGCCAC
GAAAGTGATTTCACTATTGAATAACAAAACCTACGAAAGAAACAAAGTGCCATGAAAGTGATTTCACTGTTGAATAACAAAAACTGAATAGTGACAAAAT
GTTTACAAGAGCAAATTGGCCACACATGGCACCTACTGATCTCCATCACAGCGAAAGAAACAAAGTGCCACGAAAGTGATTTCCCTATTGTATACTACCG
TTGGCCATAGGAGGGACATACCTATGTGCTGCATTTCTGTAGCAGGGGAGTGAGCCGAAGAACGTGCTACAAGTTTCTGTGATCTATAGAATTAATTTCT
ACCTCCGACCCTATGAATTTGAGATAGGCTTATATATCAACTTTGAAAGATGTGGAATGTCAAATTCCAAGCCAAATAGCCTAGTCCACTAAGTAGATTC
CAATTCCTCCAAATGAAGGATCCAAACAGGCCTCAAGGTAGTAGTGAAATTGTAGTGTGTTTTTCCAGCTGAACCTGTAATGGCAGACTGCCTACAGTGC
CCTCAAGGAACGTACTAGCAGCAATGGTATCGTCGTCTTAGTAGCTGTAGTTCTTGACGAACATGCCCTCCTTGGCCGCAGCGGCCTCACCATCGCTGGT
GTATTTGCCGAGCTGCGCCAGGGAATTGGCCTTGGCACGCAGCAGCAGCGCGTCCTGTGCTGCCTTCACGTTCTCAGGCCTGCCGCCCCATGTCTTGAGG
CAGGTGTTCTGCAGCGCCCTAGCGTAGGAGAATGACACATGCCACGGGTTGGGGCTCTGGTTCATGGCGTTCAGGTTCTGGGTCGCCTCAACCTCAGACT
GCCCACCAGACAGGAACTGCATGCATTGCACAAATAATTACAGTTCAGAACATCAAAAGAC