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Detailed information on CNT30237267


BLAST search results

BLAST vs Swiss-Prot:
sp|Q944G9|ALFP2_ARATH, E-value = 4e-54

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676392Brassica oleraceaSetaria viridis9.1220.1189.1974forward
CNT30640893Brassica oleraceaNymphaea colorata20.5918.4983.23167forward
CNT30314796Brassica oleraceaCorylus avellana21.9525.9183.71178forward
CNT30518741Brassica oleraceaJuglans regia22.0736.0982.68179forward
CNT30702585Brassica oleraceaQuercus lobata14.350.2284.48116forward
CNT30380779Brassica oleraceaManihot esculenta39.0950.8880.13317forward
CNT30200362Brassica oleraceaPisum sativum24.2970.6184.77197forward
CNT30710704Brassica oleraceaGlycine max22.6923.6582.61184forward
CNT30297329Brassica oleraceaTriticum aestivum7.8927.4789.0664forward
CNT30390900Brassica oleraceaTriticum turgidum1821.181.51146forward
CNT30586189Brassica oleraceaMusa acuminata20.9623.8182.94170forward
CNT30538163Brassica oleraceaBrassica napus49.280.9399.75399forward
CNT30258087Brassica oleraceaAvena sativa19.7334.1981.88160forward
CNT30663719Brassica oleraceaTriticum dicoccoides7.8924.5287.564forward
CNT3075914Brassica oleraceaBrassica juncea74.699.8395.37605forward
CNT30263633Brassica oleraceaBrassica rapa74.85101.5189.62607forward
CNT30462400Brassica oleraceaSaccharum spontaneum27.3716.3180.18222forward
CNT30610790Brassica oleraceaGossypium raimondii13.9336.9389.38113forward
CNT30365786Brassica oleraceaSorghum bicolor22.8171.4380.54185forward
CNT30620107Brassica oleraceaCajanus cajan20.4711.9483.13166forward
CNT30570331Brassica oleraceaVitis vinifera27.9938.4786.34227forward
CNT30319836Brassica oleraceaAsparagus officinalis20.9621.381.76170forward
CNT3037127Brassica oleraceaCucumis melo21.8232.8482.49177forward
CNT30334895Brassica oleraceaCynara cardunculus12.8225.5586.54104forward
CNT30725414Brassica oleraceaLupinus angustifolius20.5918.7485.03167forward

Expression of CNT30237267

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MCVFTCEMAAYRARPQAASFTARADGPLGMLTTVRLN

>peptide 2 (88 aa)
MAFRSSSVFRLGSWSHHARLQEDTFKHDIVLSKVKENLSPNLLCYFVSPVNVVFSVQQDLWLHYWNQSTVLKRYTQSECEISSKENPI*

Sequence

>CNT30237267
TAATTTTCAATTGTAAATGATCAAAGATAGATAACTTCAATATATAAAAAACTTATTAAAAGGAGTAGGTAATGCAAATTCAGCAGAGAAAATAAGTGAT
TTGACATGATAATAACAACCATACTCAAAAACAAATGTAGTTAAAACACTTGCTTCGTCTCCTTTAACAGCAACATTGTTGTCTTCAGTAGGTGTAGCCT
TTGACGAACATACCCTCCTTAGCCTCTTCAGACTCACCTTCTCCGGTGTATTTTCCGAGCTGAGCCAACGAATTGGCCTTGGCTCGAGTCAAGAGAGTGG
TCTGAGCTGCGTTCACGTTCTCAGCTCTGCCTCCCCAGGTTTTCAGGCAAGTGTTCTGAAGAGCACGTGCGTAGGAGAAGGACACGTGCCACGGGTTTGG
TGCCTGGTTCATGGCGTTCAGGAGTAGCTCTGTCTTTAGACTCGGCTCCTGGAGTCACCATGCTCGGCTTCAGGAGGATACCTTCAAACATGACATTGTT
CTGAGCAAGGTAAAAGAAAACCTCAGCCCAAACCTTCTCTGCTACTTCGTAAGTCCTGTCAATGTCGTGTTCTCCGTCCAACAAGATCTCTGGCTCCACT
ATTGGAACCAATCCACTGTCCTGAAAAGATACACACAATCCGAGTGTGAAATATCATCTAAAGAGAATCCAATTTAACCTGTTTCTTGAAGGAGAAGCAA
TGTGTGTGTTTACTTGTGAAATGGCAGCGTATCGAGCAAGGCCCCAAGCAGCTTCTTTCACAGCGAGAGCAGACGGACCGTTGGGAATGCTCACCACAGT
ACGCCTAAATC