« Back to Hordeum vulgare search


Detailed information on CNT30224141


BLAST search results

BLAST vs Swiss-Prot:
sp|P33629|TBA_PRUDU, E-value = 4e-76

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Hordeum vulgareOryza sativa34.7133.8193.22236forward
CNT30677932Hordeum vulgareSetaria viridis52.6548.1292.74358forward
CNT30522101Hordeum vulgareSetaria italica52.6533.7792.74358forward
CNT30533600Hordeum vulgareEucalyptus grandis24.8545.1989.35169forward
CNT30547493Hordeum vulgareIpomoea triloba49.7130.2385.8338forward
CNT30371538Hordeum vulgareArabidopsis thaliana49.2670.5380.9335forward
CNT30618173Hordeum vulgareSesamum indicum26.3222.5786.03179forward
CNT30727923Hordeum vulgareCorchorus capsularis5028.7282.65340forward
CNT3071007Hordeum vulgareQuercus suber33.0944.0384225forward
CNT30379228Hordeum vulgareManihot esculenta5038.9984.41340forward
CNT30177039Hordeum vulgareSecale cereale50.4425.2688.92343forward
CNT30295550Hordeum vulgareTriticum aestivum50.4449.3589.8343forward
CNT30391523Hordeum vulgareTriticum turgidum50.4446.5489.8343forward
CNT30555352Hordeum vulgareOryza glaberrima52.3539.3892.98356forward
CNT30439881Hordeum vulgareAegilops tauschii38.5334.1688.93262forward
CNT30249355Hordeum vulgareAvena sativa60.8855.0592.27414forward
CNT30655883Hordeum vulgareTriticum dicoccoides47.545.2489.47323forward
CNT3075301Hordeum vulgareBrassica juncea27.6535.483.51188forward
CNT30265526Hordeum vulgareBrassica rapa53.0936.3582.55361forward
CNT30446538Hordeum vulgareSaccharum spontaneum54.2647.3190.24369forward
CNT30136973Hordeum vulgareLolium perenne24.4139.5285.54166forward
CNT30953Hordeum vulgareZea mays50.1536.0588.27341forward
CNT3041219Hordeum vulgareChlamydomonas reinhardtii27.2132.4690.81185forward
CNT30219368Hordeum vulgareKalanchoe fedtschenkoi27.0631.5184.24184forward
CNT30689745Hordeum vulgareTriticum urartu47.542.3989.78323forward
CNT30361562Hordeum vulgareSorghum bicolor52.6536.289.66358forward
CNT30371350Hordeum vulgareOryza glumipatula52.3543.4192.42356forward
CNT30482824Hordeum vulgareChara braunii42.3537.8484.72288forward
CNT30103952Hordeum vulgareOryza rufipogon52.3538.3292.98356forward
CNT30575513Hordeum vulgareOryza barthii36.0332.8493.47245forward
CNT30582828Hordeum vulgareEchinochloa crusgalli52.2141.3889.58355forward
CNT30117950Hordeum vulgareOryza nivara37.6530.8892.58256forward
CNT30593783Hordeum vulgareEragrostis curvula28.3836.5593.26193forward
CNT30558847Hordeum vulgarePanicum hallii22.2120.4692.05151forward
CNT30724701Hordeum vulgareLupinus angustifolius47.0628.3482.19320forward

Expression of CNT30224141

Peptides detected in this lncRNA

>peptide 1 (56 aa)
MPSPTYQWTKARLAYMRSNLWSMREKTSTTLVELEIMQTALCTLARSPPGTTVGGW*

>peptide 2 (36 aa)
MPHLNPVGHQSTNWMVRLVLMVATAAFTSLGTTSPRY

>peptide 3 (30 aa)
LETCNVELGIERGWKPRMRTEIRTATEITL*

Sequence

>CNT30224141
GCTCGAAACTTGCAACGTGGAACTTGGAATTGAAAGAGGATGGAAACCTAGAATGAGGACGGAAATCAGGACAGCAACGGAAATAACACTGTAACGAAGC
AGGACAGAACAAATTAAGCGAGATACTTGTTCCACGAAGTACTAATGATGCAGTTCAACAGCGACATAGAAAGCACCGATGGCTTACAACCTCACCCCAA
AACAGGACGGCAAAGCAACATGTAGTTAAAGATAGGCGGCAGAGGAGACGGATCCTCCGTCGAGCGGACGAGCAGATCAGTAGTCGTCGTCCTCCTCGCC
ATCCTCGTCGTCGCCGCCCTCTGCGCCGACCTCCTCGTAGTCCTTCTCCAGGGCGGCCAGGTCCTCACGGGCCTCCGAGAACTCGCCCTCCTCCATGCCC
TCGCCCACGTACCAGTGGACGAAGGCGCGCTTGGCGTACATGAGGTCGAACTTGTGGTCAATGCGGGAGAAGACCTCGACGACGCTGGTGGAGTTGGAGA
TCATGCAGACGGCCCTCTGCACCTTGGCCAGGTCGCCGCCGGGCACCACAGTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTC
CACGAACTGGATGGTGCGCTTGGTCTTGATGGTGGCAACGGCCGCGTTCACGTCCTTGGGCACCACGTCGCCCCGGTACA