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Detailed information on CNT30117950


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53M52|TBA2_ORYSJ, E-value = 1e-117

BLAST vs NONCODE:
NONGMAT000219, E-value = 3e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697150Oryza nivaraOryza sativa32.9374.7999.27273forward
CNT30677979Oryza nivaraSetaria viridis52.7146.0590.85437forward
CNT30640127Oryza nivaraNymphaea colorata21.9522.8182.97182forward
CNT30533600Oryza nivaraEucalyptus grandis39.8188.2487.88330forward
CNT30517711Oryza nivaraJuglans regia13.6321.3284.96113forward
CNT30371538Oryza nivaraArabidopsis thaliana32.8157.2680.88272forward
CNT30618173Oryza nivaraSesamum indicum31.7233.1781.37263forward
CNT30729860Oryza nivaraCorchorus capsularis55.9750.1681.68464forward
CNT3071007Oryza nivaraQuercus suber45.673.9781.75378forward
CNT30379228Oryza nivaraManihot esculenta59.4756.5481.95493forward
CNT30507454Oryza nivaraNicotiana attenuata42.153.7881.66349forward
CNT30712730Oryza nivaraGlycine max37.0359.9682.74307forward
CNT3098615Oryza nivaraSolanum tuberosum28.5946.282.7237forward
CNT30184570Oryza nivaraSecale cereale55.8573.0391.14463forward
CNT30224141Oryza nivaraHordeum vulgare30.8837.6592.58256forward
CNT30391405Oryza nivaraTriticum turgidum60.0765.6190.76498forward
CNT3085161Oryza nivaraVigna radiata34.540.882.17286forward
CNT30555384Oryza nivaraOryza glaberrima99.6496.6195.64826forward
CNT30144688Oryza nivaraMedicago truncatula23.0453.882.2191forward
CNT30439881Oryza nivaraAegilops tauschii59.5964.4190.08494forward
CNT30247895Oryza nivaraAvena sativa51.9957.4789.56431forward
CNT30662251Oryza nivaraTriticum dicoccoides60.0773.4590.96498forward
CNT30265526Oryza nivaraBrassica rapa43.4336.2581.67360forward
CNT30446538Oryza nivaraSaccharum spontaneum61.6465.5190.22511forward
CNT30136973Oryza nivaraLolium perenne29.3157.8687.24243forward
CNT30953Oryza nivaraZea mays61.453.8189.59509forward
CNT3041219Oryza nivaraChlamydomonas reinhardtii26.0637.8992.13216forward
CNT30229012Oryza nivaraAnanas comosus26.1826.1885.71217forward
CNT30219368Oryza nivaraKalanchoe fedtschenkoi27.7439.3884.78230forward
CNT30208739Oryza nivaraHelianthus annuus24.6151.6585.78204forward
CNT30684179Oryza nivaraTriticum urartu31.7241.9592.02263forward
CNT30721351Oryza nivaraTriticum spelta30.6438.3792.13254forward
CNT30340361Oryza nivaraEragrostis tef21.3533.8495.48177forward
CNT30597072Oryza nivaraOryza meridionalis41.3847.2598.83343forward
CNT30356256Oryza nivaraLactuca sativa27.0243.2481.25224forward
CNT30371352Oryza nivaraOryza glumipatula71.6567.1997.98594forward
CNT30482824Oryza nivaraChara braunii27.0229.4382.59224forward
CNT30570163Oryza nivaraVitis vinifera54.1654.2380.85449forward
CNT30106557Oryza nivaraOryza longistaminata25.6999.5397.18213forward
CNT3024728Oryza nivaraPopulus trichocarpa25.5726.1182.55212forward
CNT30119652Oryza nivaraCitrus clementina24.8527.0379.61206forward
CNT30148523Oryza nivaraBrachypodium distachyon29.1937.5290.91242forward
CNT30104256Oryza nivaraOryza rufipogon10063.7798.31829forward
CNT30578324Oryza nivaraOryza barthii81.6668.9496.45677forward
CNT30582828Oryza nivaraEchinochloa crusgalli61.0458.9788.93506forward
CNT30593783Oryza nivaraEragrostis curvula23.2836.5590.67193forward
CNT30558847Oryza nivaraPanicum hallii46.9252.7191.52389forward
CNT30724701Oryza nivaraLupinus angustifolius58.1442.6981.54482forward

Expression of CNT30117950

Peptides detected in this lncRNA

>peptide 1 (73 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

>peptide 2 (61 aa)
GFVLRQTTHLDIKDATKKVHINNTGHSSESYKQTLHNRKANVFQNQTHKLIDRSPHGQIIG*

>peptide 3 (41 aa)
MRSNLMSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

Sequence

>CNT30117950
GGCTTCGTTTTACGACAAACCACTCACTTGGATATTAAAGATGCCACAAAGAAGGTTCACATAAACAACACAGGTCACAGCAGCGAAAGCTACAAGCAAA
CCCTGCATAATCGAAAAGCAAATGTTTTTCAAAACCAGACACACAAACTGATAGATAGAAGCCCACACGGACAGATCATAGGATAGCAGCAGTAATCAAG
CATTGCCAAGGCACCAGGCAAGAACCCTGAACCTCTCTAGTACTCGTCACCCTCATCACCCTCGTCACCATCGTCGAACTCGGAGCCGACCTCCTCGTAG
TCCTTCTCCAGCGCGCTTGGAGTACATGAGGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACGACGCTGGTGGAGTTGGAGATCATGCACACGGCC
CTCTGCACCTTGGCCAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATGG
TGCGCTTCGTCTTGATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTGGCGCGG
GTCGCACTTGGCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTGCTCGTGGTAGGCCTTCTCGGCCGAGATCACCGGG
GCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTGACATCCACATTCAGAGCACCATCGAACCTCAGGGAGG
CAGTCAGTGAGGAGATGACCTGCAGCACA