CANTATAdb - search

Detailed information on CNT30103952

BLAST search results

BLAST vs Swiss-Prot:
sp|Q53M52|TBA2_ORYSJ, E-value = 7e-131

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30371538	Oryza rufipogon	Arabidopsis thaliana	44.13	86.32	79.51	410	forward
CNT30618173	Oryza rufipogon	Sesamum indicum	45.64	53.47	82.31	424	forward
CNT30504799	Oryza rufipogon	Nicotiana attenuata	34.34	81.59	82.76	319	forward
CNT30284381	Oryza rufipogon	Triticum aestivum	67.92	82.59	87.48	631	forward
CNT30224141	Oryza rufipogon	Hordeum vulgare	38.32	52.35	92.98	356	forward
CNT30391559	Oryza rufipogon	Triticum turgidum	51.99	75.94	88.82	483	forward
CNT30555352	Oryza rufipogon	Oryza glaberrima	94.08	96.68	97.48	874	forward
CNT30136973	Oryza rufipogon	Lolium perenne	42.09	93.1	86.96	391	forward
CNT30689745	Oryza rufipogon	Triticum urartu	67.71	82.55	85.85	629	forward
CNT30597037	Oryza rufipogon	Oryza meridionalis	45.75	81.11	95.53	425	forward
CNT30371350	Oryza rufipogon	Oryza glumipatula	55.87	63.29	99.23	519	forward
CNT30482824	Oryza rufipogon	Chara braunii	31	37.84	83.33	288	forward

Expression of CNT30103952

Peptides detected in this lncRNA

>peptide 1 (75 aa)
KNDFNAIDTTLRSRGFVLRQTTNLDIKDATKKVHINNTGHSSESYKQTLHNRKANVFQNQTHKLIDRSPHGQIIG*

>peptide 2 (56 aa)
MPSPTYQWTKARLEYMRSNLMSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

>peptide 3 (72 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLAFSAEITGA*

Sequence

>CNT30103952
AAAAAAACGATTTCAATGCTATAGACACAACTTTACGAAGTAGAGGCTTCGTTTTACGACAAACCACGAACTTGGATATTAAAGATGCCACAAAGAAGGT
TCACATAAACAACACAGGTCACAGCAGCGAAAGCTACAAGCAAACCCTGCATAATCGAAAAGCAAATGTTTTTCAAAACCAGACACACAAACTGATAGAT
AGAAGCCCACACGGACAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAGGCACCAGGCAAGAACCCTGAACCTCTCTAGTACTCGTCACCCTCAT
CACCCTCGTCACCATCGTCGAACTCGGAGCCGACCTCCTCGTAGTCCTTCTCCAGCGCGGCGAGGTCCTCGCGGGCCTCGGAGAACTCCCCCTCCTCCAT
GCCCTCGCCGACGTACCAGTGGACGAAGGCGCGCTTGGAGTACATGAGGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACGACGCTGGTGGAGTTG
GAGATCATGCACACGGCCCTCTGCACCTTGGCCAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACC
AGTCCACGAACTGGATGGTGCGCTTCGTCTTGATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCAT
GTACTTGCCGTGGCGCGGGTCGCACTTGGCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGCCTTCTCGGCCGAGATCACCGGGGCGTAGGAGGAAAGC
ATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTGACATCCACATTCAGAGCACCATCGAACCTCAGGGAGGCAGTCAGTGAGGAGA
TGACCTGCAGCACATTAGCATTAGCCACA