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Detailed information on CNT30371350


BLAST search results

BLAST vs Swiss-Prot:
sp|P33632|TBB3_ANEPH, E-value = 9e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677760Oryza glumipatulaSetaria viridis53.1748.0789.91436forward
CNT30522101Oryza glumipatulaSetaria italica53.1741.1389.91436forward
CNT30517711Oryza glumipatulaJuglans regia24.0237.1781.73197forward
CNT30371538Oryza glumipatulaArabidopsis thaliana46.7180.6379.37383forward
CNT30618173Oryza glumipatulaSesamum indicum29.0230.0182.35238forward
CNT30709049Oryza glumipatulaGlycine max36.4643.1582.27299forward
CNT30295550Oryza glumipatulaTriticum aestivum53.2962.8887.87437forward
CNT30224141Oryza glumipatulaHordeum vulgare43.4152.3592.42356forward
CNT30391523Oryza glumipatulaTriticum turgidum53.2959.2988.1437forward
CNT3086234Oryza glumipatulaVigna radiata32.0749.6280.61263forward
CNT30555352Oryza glumipatulaOryza glaberrima63.5457.6397.89521forward
CNT30249355Oryza glumipatulaAvena sativa47.251.4689.41387forward
CNT3041219Oryza glumipatulaChlamydomonas reinhardtii42.6861.488.57350forward
CNT30229012Oryza glumipatulaAnanas comosus30.2429.9285.08248forward
CNT30689745Oryza glumipatulaTriticum urartu53.2957.3585.81437forward
CNT30361562Oryza glumipatulaSorghum bicolor54.1544.8988.06444forward
CNT30597037Oryza glumipatulaOryza meridionalis38.4160.1195.56315forward
CNT30482824Oryza glumipatulaChara braunii35.1237.8483.33288forward
CNT30430260Oryza glumipatulaPapaver somniferum25.1235.481.07206forward
CNT30103952Oryza glumipatulaOryza rufipogon63.2955.8799.23519forward

Expression of CNT30371350

Peptides detected in this lncRNA

>peptide 1 (65 aa)
IRYPKEVSRQLKVTQLFSSIKKISMPLTLRQTTNLDTKDATKKPTRADHRIAAVIKHCQGTRQEP*

>peptide 2 (57 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSPGRRRTA*

>peptide 3 (41 aa)
MRSNLMSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

Sequence

>CNT30371350
TAATCAGATATCCAAAAGAAGTTTCACGCCAATTAAAGGTCACACAATTATTCTCTAGCATAAAAAAGATTTCAATGCCATTGACTTTAAGACAAACGAC
GAACTTGGATACTAAAGATGCCACAAAGAAGCCCACACGGGCAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAGGCACCAGGCAAGAACCCTGA
ACCCTCTCTAGTACTCGTCACCCTCATCACCCTCGTCACCATCGTCGAACTCGGAGCCGACCTCCTCGTAGTCCTTCTCCAGCGCGGCGAGGTCCTCGCG
AGCCTCGGAGAACTCCCCCTCCTCCATGCCCTCGCCGACGTACCAGTGAACGAAGGCGCGCTTGGAGTACATGAGGTCGAACTTGATGTCGATGCGGGAG
AACACCTCGACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGGCCAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGA
TGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTCGTCTTGATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTC
GCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTGGCGCGGATCACCGGGGCGTAGGAGGACAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGT
TGGTCTGGAACTCGTTGACATCCACATTCAGAGCACCATCGAACCTCAGGGAGGCAGTCAGTGAGGAGATGACCTGCAGCACATTAGCATTAGCCACATG
ATGTCAAGACAAATTGCACA