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Detailed information on CNT30692533


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 6e-92

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677979Oryza sativaSetaria viridis44.4132.6791.61310forward
CNT30522101Oryza sativaSetaria italica44.4129.2591.94310forward
CNT30533600Oryza sativaEucalyptus grandis36.2567.6589.72253forward
CNT30547493Oryza sativaIpomoea triloba44.9928.0987.58314forward
CNT30371538Oryza sativaArabidopsis thaliana26.9339.5883.51188forward
CNT30618173Oryza sativaSesamum indicum39.6834.9381.59277forward
CNT30727924Oryza sativaCorchorus capsularis44.4132.4383.23310forward
CNT3071007Oryza sativaQuercus suber41.9857.3483.28293forward
CNT30379228Oryza sativaManihot esculenta44.1335.3283.77308forward
CNT30504799Oryza sativaNicotiana attenuata28.9451.6685.15202forward
CNT30712730Oryza sativaGlycine max39.2653.5284.31274forward
CNT3098615Oryza sativaSolanum tuberosum24.7933.7285.55173forward
CNT30184570Oryza sativaSecale cereale44.9949.5391.08314forward
CNT30295408Oryza sativaTriticum aestivum44.9950.6591.4314forward
CNT30224141Oryza sativaHordeum vulgare33.8134.7193.22236forward
CNT30391559Oryza sativaTriticum turgidum63.4769.6587.36443forward
CNT3085161Oryza sativaVigna radiata28.2228.183.76197forward
CNT30553152Oryza sativaOryza glaberrima39.5439.8899.28276forward
CNT30439881Oryza sativaAegilops tauschii44.9940.9490.45314forward
CNT30249355Oryza sativaAvena sativa44.9941.7690.13314forward
CNT30662251Oryza sativaTriticum dicoccoides44.9946.3191.72314forward
CNT3075301Oryza sativaBrassica juncea26.9335.482.45188forward
CNT30265526Oryza sativaBrassica rapa44.5631.3282.32311forward
CNT30445850Oryza sativaSaccharum spontaneum44.8434.489.46313forward
CNT30136973Oryza sativaLolium perenne53.4488.8184.18373forward
CNT30953Oryza sativaZea mays44.9933.1989.17314forward
CNT3041219Oryza sativaChlamydomonas reinhardtii30.9537.8990.74216forward
CNT30219368Oryza sativaKalanchoe fedtschenkoi32.9539.3883.91230forward
CNT30208739Oryza sativaHelianthus annuus46.1381.5281.68322forward
CNT30689745Oryza sativaTriticum urartu62.4657.2283.94436forward
CNT30720142Oryza sativaTriticum spelta24.547.7787.13171forward
CNT30361562Oryza sativaSorghum bicolor44.4131.3490.97310forward
CNT30597072Oryza sativaOryza meridionalis37.5436.0993.13262forward
CNT30369826Oryza sativaOryza glumipatula39.9754.4998.21279forward
CNT30482824Oryza sativaChara braunii26.0723.9283.52182forward
CNT30570163Oryza sativaVitis vinifera44.4137.4482.58310forward
CNT30106557Oryza sativaOryza longistaminata13.1842.9994.5792forward
CNT30119652Oryza sativaCitrus clementina24.0722.0579.76168forward
CNT30148523Oryza sativaBrachypodium distachyon20.221.8694.33141forward
CNT30100809Oryza sativaOryza rufipogon5054.7100349forward
CNT30575848Oryza sativaOryza barthii82.6664.1899.13577forward
CNT30582828Oryza sativaEchinochloa crusgalli44.9936.689.49314forward
CNT30117869Oryza sativaOryza nivara50.4359.2692.33352forward
CNT30593783Oryza sativaEragrostis curvula27.3636.1792.67191forward
CNT30558847Oryza sativaPanicum hallii32.9531.1792.17230forward
CNT30724701Oryza sativaLupinus angustifolius44.1327.2881.49308forward

Expression of CNT30692533

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MPHLNPVGHQSTNWMVRLVLMVATAAFTSLGTTSPRYMRQQAMYLPWRGSHLAIMEDGSKALLDESMKWILG*

>peptide 2 (48 aa)
NAHIISDEAVSHKTGHTGYNNEGCKPIKPQTSDHHKQMSRRHTHTATG*

>peptide 3 (34 aa)
MRENTSTTLVELEIMHTALCTLARSPLGTTLGGW*

Sequence

>CNT30692533
AAACGCGCATATTATAAGTGACGAAGCGGTCTCACATAAAACAGGGCACACAGGTTACAACAACGAGGGTTGTAAGCCCATTAAGCCCCAAACATCAGAT
CACCACAAGCAAATGTCTCGAAGACACACGCACACGGCAACAGGATAACTCCACACTGGCAGATCATGGGATAGCAGCAGTTATCAATCAGGCCTTGACA
CACAGAACATCAAGCCCCCAGACGACGACGACTCCTCTAGTACTCGTCACCATCATCGCCATCCTCATTCTCGTCGAACTTGTGGTCGATGCGGGAGAAC
ACCTCCACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGGCGAGGTCGCCGCTGGGGACGACGCTGGGCGGCTGGTAGTTGATGC
CGCACTTGAACCCCGTCGGGCACCAGTCCACGAACTGGATGGTGCGCTTGGTCTTGATGGTGGCGACGGCGGCGTTCACGTCCTTGGGCACGACATCGCC
GCGGTACATGAGGCAGCAGGCCATGTACTTGCCGTGGCGAGGGTCGCACTTGGCCATCATGGAGGATGGCTCGAAGGCACTGTTGGACGAAAGCATGAAG
TGGATCCTTGGGTAGGGCACAAGGTTGGTCTGGAACTCATTGACATCCACGTTCAGAGCACCATCAAACCTCAGGGAGGCGGTCAGGGATGAGATAAC