Detailed information on CNT30555352


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53M52|TBA2_ORYSJ, E-value = 1e-130

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677760Oryza glaberrimaSetaria viridis53.4353.2590.48483forward
CNT30522101Oryza glaberrimaSetaria italica53.4345.5790.48483forward
CNT30371538Oryza glaberrimaArabidopsis thaliana45.3586.3279.51410forward
CNT30618173Oryza glaberrimaSesamum indicum46.953.4782.08424forward
CNT30504799Oryza glaberrimaNicotiana attenuata35.2981.5982.45319forward
CNT30284381Oryza glaberrimaTriticum aestivum69.882.5987.32631forward
CNT30224141Oryza glaberrimaHordeum vulgare39.3852.3592.98356forward
CNT30391523Oryza glaberrimaTriticum turgidum53.3265.489482forward
CNT30249355Oryza glaberrimaAvena sativa48.0157.7189.63434forward
CNT30655883Oryza glaberrimaTriticum dicoccoides53.5467.7986.36484forward
CNT30265526Oryza glaberrimaBrassica rapa47.3543.181.07428forward
CNT30136973Oryza glaberrimaLolium perenne43.2593.186.7391forward
CNT30229012Oryza glaberrimaAnanas comosus27.4329.9285.08248forward
CNT30689745Oryza glaberrimaTriticum urartu69.5882.5585.69629forward
CNT30361562Oryza glaberrimaSorghum bicolor52.5448.0388475forward
CNT30597037Oryza glaberrimaOryza meridionalis46.7980.7397.4423forward
CNT30371350Oryza glaberrimaOryza glumipatula57.6363.5497.89521forward
CNT30482824Oryza glaberrimaChara braunii31.8637.8483.33288forward
CNT3024728Oryza glaberrimaPopulus trichocarpa29.232.5182.2264forward
CNT30103952Oryza glaberrimaOryza rufipogon96.6894.0897.48874forward

Expression of CNT30555352

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLAFSAEITGA*

>peptide 2 (56 aa)
MPSPTYQWTKARLEYMRSNLMSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

>peptide 3 (46 aa)
ASKDSNALSSCFVLRQTTNLNIKDVTKKVHINNTRSQQLELQANPA*

Sequence

>CNT30555352
TAGCATCAAAAGATTCTAATGCTTTAAGTAGTTGCTTCGTTTTAAGACAAACCACGAACTTGAATATTAAAGATGTCACAAAGAAGGTTCACATAAACAA
CACAAGGTCACAGCAGCTAGAGCTGCAAGCAAACCCGGCATAATCGAAAAGCAAATGTTCTTTCAAAAGCAGACACACAAACTGATAGATAGAAGCCCAC
ACGGGCAGATCATAGGATAGCAGCAGTAATCAGGCACATTGCCAAGGCAGCAGGAACCCCTGAACCCTCTCTAGTACTCGTCACCCTCATCACCCTCGTC
ACCATCGTCGAACTCGGAGCCGACCTCCTCGTAGTCCTTCTCCAGCGCGGCGAGGTCCTCGCGGGCCTCGGAGAACTCCCCCTCCTCCATGCCCTCGCCG
ACGTACCAGTGGACGAAGGCGCGCTTGGAGTACATGAGGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACGACGCTGGTGGAGTTGGAGATCATGC
ACACGGCCCTCTGCACCTTGGCCAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAA
CTGGATGGTGCGCTTCGTCTTGATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCG
TGGCGCGGGTCGCACTTGGCCATCATGGAGGACGGCTCGAAGGCGCTGTTGGCCTTCTCGGCCGAGATCACCGGGGCGTAGGAGGAAAGCATGAAGTGGA
TCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTGACATCCACATTCAGAGCACCGTCGAACCTCAGGGAGGCAGTCAGTGAGGAGATGACCTGCAG
CACA