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Detailed information on CNT30295550


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 2e-110

BLAST vs NONCODE:
NONGMAT000219, E-value = 1e-32

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677760Triticum aestivumSetaria viridis69.7853.4791.75485forward
CNT30224141Triticum aestivumHordeum vulgare49.3550.4489.8343forward
CNT30391523Triticum aestivumTriticum turgidum92.9587.6598.45646forward
CNT30445850Triticum aestivumSaccharum spontaneum75.6857.889.73526forward
CNT30953Triticum aestivumZea mays66.4748.8490.04462forward
CNT30229012Triticum aestivumAnanas comosus30.7925.8188.79214forward
CNT30721351Triticum aestivumTriticum spelta34.8236.5699.59242forward
CNT30340361Triticum aestivumEragrostis tef21.7328.8793.38151forward
CNT30361562Triticum aestivumSorghum bicolor75.6853.1989.92526forward
CNT30371350Triticum aestivumOryza glumipatula62.8853.2987.87437forward
CNT30482824Triticum aestivumChara braunii42.4538.7682.37295forward
CNT30104125Triticum aestivumOryza rufipogon75.439.6788.74524forward
CNT30582828Triticum aestivumEchinochloa crusgalli75.6861.3190.3526forward
CNT30333509Triticum aestivumCynara cardunculus21.8727.6485.53152forward

Expression of CNT30295550

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MAGVTLGHHGGRLEGAVGDLSDRELLMVSLLS*

>peptide 2 (59 aa)
MVRFVLMVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIMEEGSKALLVISATESCSW*

>peptide 3 (37 aa)
GKRDNMHIDQGAKQVQTYHRFIQHNRQQIKPLGQITG*

>peptide 4 (56 aa)
MPSPTYQWTKARLAYIRSNLWSMREKTSTTLVELEIMHTALWTLARSPPGTTLGGW*

Sequence

>CNT30295550
TAGGCAAACGAGATAACATGCATATTGACCAAGGTGCGAAGCAGGTTCAAACATACCACAGGTTCATACAACACAACAGACAACAGATAAAGCCGCTTGG
GCAGATCACAGGATAGTAGTAGACGAAGGCACGCTTGACGTACATCAGGTCGCAAACTCATCTGCTCTAGTACTCATCACCCTCATCACCGTCCTCGCCC
TCGTCGAACTCAGCGCCAACTTCTTCATAGTCCTTCTCCAGGGCAGCAAGATCCTCACGGGCCTCAGAGAACTCACCCTCCTCCATGCCCTCACCCACGT
ACCAGTGGACGAAGGCACGCTTAGCGTACATCAGGTCGAACTTGTGGTCGATGCGGGAGAAGACCTCGACAACGCTGGTGGAGTTGGAGATCATGCACAC
GGCCCTCTGGACCTTGGCGAGGTCGCCGCCTGGGACGACGCTGGGTGGCTGGTAGTTGATACCACACTTGAAACCAGTGGGGCACCAGTCCACAAACTGG
ATGGTGCGCTTCGTCTTGATGGTGGCCACAGCAGCGTTGACATCCTTGGGCACAACATCACCACGGTACATGAGGCAGCAGGCCATGTACTTGCCATGGC
GGGGGTCACACTTGGCCATCATGGAGGAAGGCTCGAAGGCGCTGTTGGTGATCTCAGCGACAGAGAGCTGCTCATGGTAAGCCTTCTCAGCTGAG