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Detailed information on CNT30177039


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB7|TBA_WHEAT, E-value = 5e-152

BLAST vs NONCODE:
NONGMAT000219, E-value = 2e-60

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677760Secale cerealeSetaria viridis35.7153.4789.07485forward
CNT30533600Secale cerealeEucalyptus grandis24.388.2488.79330forward
CNT30517711Secale cerealeJuglans regia15.7640.3886.92214forward
CNT30371538Secale cerealeArabidopsis thaliana30.4186.9585.71413forward
CNT30618173Secale cerealeSesamum indicum17.3829.7686.44236forward
CNT30729860Secale cerealeCorchorus capsularis37.0454.3886.48503forward
CNT3071007Secale cerealeQuercus suber27.8473.9784.66378forward
CNT30379228Secale cerealeManihot esculenta44.2668.9287.35601forward
CNT30507454Secale cerealeNicotiana attenuata26.1454.787.89355forward
CNT30709049Secale cerealeGlycine max43.5285.2884.43591forward
CNT3098615Secale cerealeSolanum tuberosum17.8947.3791.36243forward
CNT30284381Secale cerealeTriticum aestivum41.0272.9195.69557forward
CNT30224141Secale cerealeHordeum vulgare25.2650.4488.92343forward
CNT3085161Secale cerealeVigna radiata20.9140.5186.27284forward
CNT30144688Secale cerealeMedicago truncatula14.9557.1887.19203forward
CNT30247087Secale cerealeAvena sativa46.9187.0291.52637forward
CNT30655883Secale cerealeTriticum dicoccoides47.8691.0495.85650forward
CNT3059767Secale cerealeArabidopsis lyrata14.7328.2185200forward
CNT30265526Secale cerealeBrassica rapa34.4647.1385.04468forward
CNT30445643Secale cerealeSaccharum spontaneum48.9774.9789.92665forward
CNT30136247Secale cerealeLolium perenne22.5310092.48306forward
CNT30953Secale cerealeZea mays43.9663.1188.94597forward
CNT30219368Secale cerealeKalanchoe fedtschenkoi16.9439.3886.09230forward
CNT30208739Secale cerealeHelianthus annuus15.2452.4188.41207forward
CNT30689745Secale cerealeTriticum urartu45.881.6395.66622forward
CNT30721349Secale cerealeTriticum spelta22.0910095300forward
CNT30340361Secale cerealeEragrostis tef13.0333.8490.96177forward
CNT30361562Secale cerealeSorghum bicolor39.1853.7989.1532forward
CNT30482824Secale cerealeChara braunii21.7238.7682.37295forward
CNT30430260Secale cerealePapaver somniferum15.9837.2986.64217forward
CNT30570163Secale cerealeVitis vinifera34.1756.0483.62464forward
CNT3024728Secale cerealePopulus trichocarpa20.133.6287.18273forward
CNT30104125Secale cerealeOryza rufipogon48.950.2687.95664forward
CNT30582828Secale cerealeEchinochloa crusgalli48.4576.6989.82658forward
CNT30558847Secale cerealePanicum hallii28.2852.0391.93384forward
CNT30724701Secale cerealeLupinus angustifolius43.9652.8885.09597forward

Expression of CNT30177039

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MLGAQCQGSGGRCHRWPRCQEGWTHQCAQGGSGWTGHCCMAQQQRAAPGEANQGQSQFHLQQR*

>peptide 2 (56 aa)
MPSPTYQWTKARLAYIRSNLWSMREKTSTTLVELEIMHTALWTLARSPPGTTPGGW*

>peptide 3 (94 aa)
MCHAETRLYLRNKPVEVGVCWALNVKGAAADVIDGLVVKKDGHISVLKEGVGGQDTVVWLNNREPLQEKRTKARASSTSNSVEDKESLETSAVV*

>peptide 4 (76 aa)
MASLSRRMDTSVCSRREWVDRTLLYGSTTESRSRRSEPRPEPVPPPTALKTRNPWRPVQLSESFLMRSRHRSTISLP

>peptide 5 (32 aa)
MAGVTLGHHRGRLEGAVGDLSNGQLLVVSLLS*

>peptide 6 (53 aa)
MVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIIEEGSKALLVISATDSCSW*

>peptide 7 (33 aa)
NFRHQNTKETIQTSTGKWRHSSRGYGVDNQITR*

Sequence

>CNT30177039
AACTTCAGACACCAAAACACAAAGGAAACAATACAAACTTCGACAGGAAAATGGAGGCATAGCAGTAGAGGCTATGGTGTAGATAACCAGATAACCAGAT
AGCATGCATATTAACCAAGGTGCATAACAGGTTCAAACGTACAAGGTTCATACAACACAACAGGTTGTAAAACAAACACCTCAAAGCAAACGTTCAAACA
GACAGATAACAGATAAAGCCACTCTGGGCAGATCATAGGATAGCAGTAGCACGCCTTGGAAAAGCACCAGGAGGCAGGCTCTAGTACTCATCGCCCTCAT
CACCGTCCTCACCCTCGTCGAACTCAGCACCAACTTCTTCATAGTCCTTCTCCAGGGCAGCGAGATCCTCACGGGCCTCAGAGAACTCTCCCTCCTCCAT
GCCCTCACCCACATACCAGTGGACGAAGGCGCGCTTGGCGTACATCAGGTCAAATTTGTGGTCGATGCGGGAGAAGACCTCAACGACACTGGTGGAGTTG
GAGATCATGCACACAGCCCTCTGGACCTTGGCAAGGTCGCCGCCTGGGACGACACCGGGTGGCTGGTAGTTGATACCACACTTGAAGCCAGTGGGGCACC
AGTCAACAAACTGGATAGTGCGCTTGGTCTTGATGGTGGCCACGGCAGCGTTGACATCCTTGGGCACAACATCACCACGGTACATGAGACAGCAGGCCAT
GTACTTGCCATGGCGGGGGTCACACTTGGCCATCATAGAGGAAGGCTCGAAGGCGCTGTTGGTGATCTCAGCAACGGACAGCTGCTCGTGGTAAGCCTTC
TCAGCTGAGATAACTGGGGCATAGGAGGAAAGCATGAAGTGGATCCTTGGGTAGGGCACCAGGTTGGTCTGGAACTCATTGACATCAACATTCAGAGCAC
CATCAAACCTCAGGGAAGCAGTCAGTGATGAAATGACCTGCACATCAGTTGTTTAGCCAATGAATTAGATCCCAGCCAAGCATTATTAGAAAGTGCAACA
TATATAACATACATCAAACAGAAAACATGTGCCATGCAGAAACAAGACTGTACCTGAGAAACAAGCCTGTTGAGGTTGGTGTATGTTGGGCGCTCAATGT
CAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCGTTGTCAAGAAGGATGGACACATCAGTGTGCTCAAGGAGGGAGTGGGTGGACAGGACACTGTTGTA
TGGCTCAACAACAGAGAGCCGCTCCAGGAGAAGCGAACCAAGGCCAGAGCCAGTTCCACCTCCAACAGCGTTGAAGACAAGGAATCCCTGGAGACCAGTG
CAGTTGTCTGAAAGCTTCCTGATGCGGTCAAGGCATAGATCAACAATCTCCTTGCCAA