Detailed information on CNT30446538


BLAST search results

BLAST vs Swiss-Prot:
sp|P33624|TBA2_ANEPH, E-value = 9e-128

BLAST vs NONCODE:
NONGMAT000219, E-value = 9e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224141Saccharum spontaneumHordeum vulgare47.3154.2690.24369forward
CNT30555384Saccharum spontaneumOryza glaberrima63.4657.8989.9495forward
CNT30597072Saccharum spontaneumOryza meridionalis43.9747.2589.21343forward
CNT30371316Saccharum spontaneumOryza glumipatula60.7740.1790.3474forward
CNT30104125Saccharum spontaneumOryza rufipogon78.2146.1890.66610forward
CNT30578324Saccharum spontaneumOryza barthii46.1536.6690.83360forward
CNT30117950Saccharum spontaneumOryza nivara65.5161.6490.22511forward
CNT30593783Saccharum spontaneumEragrostis curvula24.2335.891.53189forward

Expression of CNT30446538

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MARQPNRFMQADQYSSSSSPSSPPPSAATSS*

>peptide 2 (93 aa)
MPHLNPVGHQSTNWMVRFVLMRATAAFTSLGTTSPRYIRQHAMYLPCRGSHLTIMEAGSNALLVISATDSCSWKAFAEEITGAYEESMKWILG*

>peptide 3 (56 aa)
MPSPTYQCTNARLAYMRSNLLLMRENTSTTLVELEIMHTARCTLARSAPGTTVGAW*

Sequence

>CNT30446538
ATAACATGCAACTACTAGAGCAGTTCAACAAGTGACCCAAGGTGCAAACGCAAAAGGTTTTTTTTGACACCGCAACATGGCTCGACAGCCAAACAGATTC
ATGCAAGCAGATCAGTACTCCTCGTCCTCCTCACCGTCATCACCGCCGCCCTCGGCAGCAACCTCCTCGTAGTCCTTCTCCAGGGCGGCCAGGTCCTCGC
GTGCCTCGGAGAACTCCCCCTCCTCCATGCCCTCACCGACGTACCAGTGCACGAACGCACGCTTGGCGTACATGAGGTCGAACTTGCTGTTGATGCGGGA
GAACACCTCGACGACGCTGGTGGAGTTGGAGATCATGCACACGGCGCGCTGCACCTTGGCGAGGTCGGCCCCAGGCACCACCGTCGGCGCCTGGTAGTTG
ATGCCGCACTTGAACCCCGTCGGGCACCAGTCCACGAACTGGATGGTGCGCTTCGTCTTGATGAGGGCCACCGCGGCGTTCACGTCCTTGGGCACCACGT
CGCCACGGTACATCAGGCAGCACGCCATGTACTTGCCGTGCCGTGGGTCACATTTGACCATCATGGAAGCCGGCTCGAACGCGCTGCTGGTGATCTCAGC
CACCGACAGCTGCTCGTGGAAGGCCTTCGCCGAAGAGATCACCGGCGCGTATGAGGAGAGCATGAAGTGGATCCTCGGGTAAGGAACCAGGTTGGTCTGG
AACTCATTCACATCCACATTGAGGGCACCATCGAACCTCAGGGAAGCAGTAAGTGATGAGATCACCTGCACACCAAAACA