Detailed information on CNT30391523


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 2e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677760Triticum turgidumSetaria viridis65.2653.0391.48481forward
CNT30522101Triticum turgidumSetaria italica65.2645.3891.68481forward
CNT30640127Triticum turgidumNymphaea colorata37.3134.4685.45275forward
CNT30517711Triticum turgidumJuglans regia28.6339.8185.31211forward
CNT30702815Triticum turgidumQuercus lobata22.2544.5782.32164forward
CNT30371538Triticum turgidumArabidopsis thaliana54.8285.0584.65404forward
CNT30727923Triticum turgidumCorchorus capsularis59.5737.0886.79439forward
CNT30712730Triticum turgidumGlycine max47.968.9585.84353forward
CNT30295550Triticum turgidumTriticum aestivum87.6592.9598.45646forward
CNT30224141Triticum turgidumHordeum vulgare46.5450.4489.8343forward
CNT3086234Triticum turgidumVigna radiata42.3358.8783.65312forward
CNT30555352Triticum turgidumOryza glaberrima65.453.3289482forward
CNT30247087Triticum turgidumAvena sativa61.7462.1694.29455forward
CNT30655883Triticum turgidumTriticum dicoccoides65.5467.6593.58483forward
CNT3059767Triticum turgidumArabidopsis lyrata25.126.0984.86185forward
CNT30265526Triticum turgidumBrassica rapa59.2944.0184.44437forward
CNT3041219Triticum turgidumChlamydomonas reinhardtii29.7238.4289.04219forward
CNT30229012Triticum turgidumAnanas comosus29.0425.8188.79214forward
CNT30361562Triticum turgidumSorghum bicolor64.4548.0390.32475forward
CNT30371350Triticum turgidumOryza glumipatula59.2953.2988.1437forward
CNT30482824Triticum turgidumChara braunii40.0338.7682.37295forward
CNT30430260Triticum turgidumPapaver somniferum26.3233.3385.05194forward
CNT3024728Triticum turgidumPopulus trichocarpa37.0433.6284.98273forward
CNT30593783Triticum turgidumEragrostis curvula26.3236.7489.18194forward
CNT30333509Triticum turgidumCynara cardunculus20.6227.6485.53152forward
CNT30724701Triticum turgidumLupinus angustifolius56.3136.7685.78415forward

Expression of CNT30391523

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGVGKPDNMHIDQGAKQVQTYHRFIQHNR*

>peptide 2 (47 aa)
MVRFVLMVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIMEEGSKAL

>peptide 3 (32 aa)
IIQATTPTKLHEETMQILKQGNGDGQQQRLWV*

>peptide 4 (56 aa)
MPSPTYQWTKARLAYIRSNLWSMREKTSTTLVELEIMHTALWTLARSPPGTTLGGW*

Sequence

>CNT30391523
GGATTATCCAGGCGACAACACCAACCAAATTACACGAAGAAACAATGCAGATACTGAAACAGGGAAATGGTGATGGACAGCAGCAGAGGCTATGGGTGTA
GGCAAACCAGATAACATGCATATTGACCAAGGTGCGAAGCAGGTTCAAACATACCACAGGTTCATACAACACAACAGATAAAGCCGCTTGGGCAGATCAC
AGGATAGTAGTAGACGAAGGGACGCTTGACGTACATCAGGTCGCAAACTCATCTGCTCTAGTACTCATCACCCTCATCACCGTCCTCGCCCTCGTCGAAC
TCAGCGCCAACTTCTTCATAGTCCTTCTCCAGGGCAGCAAGATCCTCACGGGCCTCAGAGAACTCACCCTCCTCCATGCCCTCACCCACGTACCAGTGGA
CGAAGGCACGCTTAGCGTACATCAGGTCGAACTTGTGGTCGATGCGGGAGAAGACCTCGACAACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTG
GACCTTGGCGAGGTCGCCGCCTGGGACGACGCTGGGTGGCTGGTAGTTGATACCACACTTGAAACCAGTGGGGCACCAGTCCACAAACTGGATGGTGCGC
TTCGTCTTGATGGTGGCCACAGCAGCGTTGACATCCTTGGGCACAACATCACCACGGTACATGAGGCAGCAGGCCATGTACTTGCCGTGGCGGGGGTCAC
ACTTGGCCATCATGGAGGAAGGCTCGAAGGCGCTGTT