Detailed information on CNT30677932


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRA9|TBB4_WHEAT, E-value = 5e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517711Setaria viridisJuglans regia28.3639.8185.78211forward
CNT30224141Setaria viridisHordeum vulgare48.1252.6592.74358forward
CNT3086234Setaria viridisVigna radiata35.7550.1983.08266forward
CNT30229012Setaria viridisAnanas comosus30.7827.6289.08229forward
CNT30204030Setaria viridisHelianthus annuus28.0950.3685.65209forward
CNT30597037Setaria viridisOryza meridionalis31.1844.2789.66232forward
CNT30482824Setaria viridisChara braunii39.7838.983.45296forward
CNT30430260Setaria viridisPapaver somniferum27.6935.483.98206forward
CNT3024728Setaria viridisPopulus trichocarpa36.6933.6284.62273forward

Expression of CNT30677932

Peptides detected in this lncRNA

>peptide 1 (68 aa)
PRHTGLTQQQEASSSTRHPRLLPRPRRTQRRPPRSPSRAQPGPHGPQRTRPPPCPHPRTSERRHAWRT*

>peptide 2 (48 aa)
MASLSSRTATSVCSRREWVDRTLLYGSTTEVETWGDGYTVNPSLDFLP*

>peptide 3 (88 aa)
MPHLNPVGHQSTNWMVRLVLMVATAALTSLGTTSPRYMRQQAIGGRCHRWPHCQAEQQHQCARGGSGWTGHCCMAQPLRWRPGEMGTQ*

>peptide 4 (30 aa)
MLPSTSLTEEGVESIITSSNGLVAGHLAISL

>peptide 5 (41 aa)
MRSNLWSMRENTSTTLVELEIMHTARCTLARSPPGTTLGGW*

Sequence

>CNT30677932
ACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCCTCGTCTCCTTCCTCGCCCTCGTCGAACTCAGCGCCGACCTCCT
CGTAGTCCTTCTCGAGCGCAGCCAGGTCCTCACGGGCCTCAGAGAACTCGCCCTCCTCCATGCCCTCACCCACGTACCAGTGAACGAAGGCACGCTTGGC
GTACATGAGGTCAAACTTGTGGTCGATGCGGGAGAACACCTCGACCACGCTGGTGGAGTTGGAGATCATGCACACGGCACGCTGCACCTTGGCCAGGTCA
CCGCCAGGCACCACGCTGGGGGGCTGGTAGTTGATGCCGCACTTGAACCCAGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTGGTCTTGATGGTGG
CAACAGCAGCGTTGACGTCCTTGGGCACCACATCACCACGGTACATGAGGCAGCAAGCCATCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGCAGA
ACAGCAACATCAGTGTGCTCGAGGAGGGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACCACTGAGGTGGAGACCTGGGGAGATGGGTACACAGTGA
ACCCGAGCTTGGACTTCTTGCCATAGTCAACAAAAACAGCACGGGGCACATGCTTCCCAGCACCAGTCTCACTGAAGAAGGTGTTGAAAGCATCATCACC
TCCTCCAACGGTCTTGTCGCCGGGCATCTGGCCATCAGCCTGAA