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Detailed information on CNT30482824


BLAST search results

BLAST vs Swiss-Prot:
sp|P33629|TBA_PRUDU, E-value = 6e-64

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Chara brauniiOryza sativa23.9226.0783.52182forward
CNT30677932Chara brauniiSetaria viridis38.939.7883.45296forward
CNT30522101Chara brauniiSetaria italica38.927.9283.45296forward
CNT30640127Chara brauniiNymphaea colorata33.2531.780.63253forward
CNT30533600Chara brauniiEucalyptus grandis12.4825.484.2195forward
CNT30547493Chara brauniiIpomoea triloba33.3822.7282.28254forward
CNT30702815Chara brauniiQuercus lobata13.5327.9987.38103forward
CNT30372454Chara brauniiArabidopsis thaliana13.2721.1385.15101forward
CNT30618214Chara brauniiSesamum indicum18.442.5581.43140forward
CNT30727924Chara brauniiCorchorus capsularis38.7630.8680.68295forward
CNT30379228Chara brauniiManihot esculenta36.1431.5481.82275forward
CNT30504800Chara brauniiNicotiana attenuata22.0838.0181.55168forward
CNT30709049Chara brauniiGlycine max32.5935.7981.45248forward
CNT30177039Chara brauniiSecale cereale38.7621.7282.37295forward
CNT30295550Chara brauniiTriticum aestivum38.7642.4582.37295forward
CNT30224141Chara brauniiHordeum vulgare37.8442.3584.72288forward
CNT30391523Chara brauniiTriticum turgidum38.7640.0382.37295forward
CNT3086234Chara brauniiVigna radiata32.9847.3680.08251forward
CNT30555352Chara brauniiOryza glaberrima37.8431.8683.33288forward
CNT30439881Chara brauniiAegilops tauschii30.0929.8682.53229forward
CNT30249355Chara brauniiAvena sativa33.5133.9183.53255forward
CNT30655883Chara brauniiTriticum dicoccoides38.7641.3282.03295forward
CNT30265526Chara brauniiBrassica rapa33.3825.5882.68254forward
CNT30445643Chara brauniiSaccharum spontaneum36.143182.91275forward
CNT30953Chara brauniiZea mays36.2729.1882.61276forward
CNT3041219Chara brauniiChlamydomonas reinhardtii20.6327.5485.99157forward
CNT30204030Chara brauniiHelianthus annuus22.7341.6983.24173forward
CNT30689745Chara brauniiTriticum urartu38.7638.7181.69295forward
CNT30720138Chara brauniiTriticum spelta19.1942.4480.82146forward
CNT30361562Chara brauniiSorghum bicolor38.929.9383.11296forward
CNT30597159Chara brauniiOryza meridionalis21.5522.6584.15164forward
CNT30371350Chara brauniiOryza glumipatula37.8435.1283.33288forward
CNT30430260Chara brauniiPapaver somniferum19.1925.0984.25146forward
CNT30571197Chara brauniiVitis vinifera31.861.4278.93242forward
CNT3022486Chara brauniiPopulus trichocarpa24.3129.6583.24185forward
CNT30103952Chara brauniiOryza rufipogon37.843183.33288forward
CNT30575513Chara brauniiOryza barthii29.0429.6282.35221forward
CNT30582828Chara brauniiEchinochloa crusgalli38.934.581.42296forward
CNT30117950Chara brauniiOryza nivara29.4327.0282.59224forward
CNT30593783Chara brauniiEragrostis curvula22.0831.8281.55168forward
CNT30724701Chara brauniiLupinus angustifolius38.3725.8682.88292forward

Expression of CNT30482824

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MVYPREDLGDARGIRNHADRALHLCQVAARNDGRRLVVNAALEAGRAPINELNGSFRLDSGYGGVDI

>peptide 2 (47 aa)
SRPVRAARVSRAIFKTLENSQIRKFSISTHSSPPSSSLSANSAATSS*

>peptide 3 (37 aa)
MAPTPRTLRHAQVSTPRRPCSISAISMPTSSNQSPFP*

Sequence

>CNT30482824
TCCCGACCTGTGCGAGCTGCCAGAGTCTCGCGCGCCATTTTCAAAACACTAGAAAATTCTCAAATTAGAAAATTCTCAATTAGCACTCACTCCTCTCCGC
CGTCCTCCTCATTGTCGGCAAATTCCGCGGCTACCTCCTCATAGTCTTCTTCCACGGCTACCTCCTCATATTCTTCTTCCATGGCTCCAACGCCGCGAAC
ATTACGACACGCTCAAGTCAGCACTCCTCGTCGTCCGTGCTCAATATCAGCAATTTCCATGCCTACCTCCTCAAATCAGTCCCCTTTTCCATGACTGCGA
CTCCGAGAACACTACGAACTCCTCAAGTCAGCACTCCTCGTTAGCCTCCTCCTCATTATCGGCTAATTCTGAGGCCATGTCCTCAAATTGGTCTTTTTTC
CACGACTGCGACTCCGAGCACACTACAACATCCTCAAAAAATCAAAGTTAGTACTCCTCCCCATCGTCCTCACGGGCCTCAGAGAATTCTCCTTCTTCCA
TACCCTCGCCGACGTACCAGTGAACGAACGCGCGCTTGGCGTACATCAGGTCAAACTTATGGTCTATCCTAGAGAAGACCTCGGCGACGCTCGTGGAATT
CGAAATCATGCAGACCGCGCGCTGCACCTTTGCCAGGTCGCCGCCCGGAACGACGGTCGGCGGCTGGTAGTTAATGCCGCACTTGAAGCCGGTCGGGCAC
CAATCAACGAACTGAATGGTTCTTTTCGTCTTGATAGTGGCTACGGCGGCGTTGACATCCT