Detailed information on CNT30361562


BLAST search results

BLAST vs Swiss-Prot:
sp|P33632|TBB3_ANEPH, E-value = 3e-25

BLAST vs NONCODE:
NONGMAT000220, E-value = 1e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Sorghum bicolorOryza sativa31.3444.4190.97310forward
CNT30677760Sorghum bicolorSetaria viridis49.0453.4792.37485forward
CNT30517711Sorghum bicolorJuglans regia21.0339.2585.58208forward
CNT30371538Sorghum bicolorArabidopsis thaliana43.7891.1682.45433forward
CNT30618173Sorghum bicolorSesamum indicum27.133.886.57268forward
CNT30727923Sorghum bicolorCorchorus capsularis46.6138.9485.47461forward
CNT30379228Sorghum bicolorManihot esculenta49.3455.9686.27488forward
CNT30712730Sorghum bicolorGlycine max40.4478.1283.5400forward
CNT3098615Sorghum bicolorSolanum tuberosum25.4849.1285.32252forward
CNT30177039Sorghum bicolorSecale cereale53.7939.1889.1532forward
CNT30295550Sorghum bicolorTriticum aestivum53.1975.6889.92526forward
CNT30224141Sorghum bicolorHordeum vulgare36.252.6589.66358forward
CNT30391523Sorghum bicolorTriticum turgidum48.0364.4590.32475forward
CNT30555352Sorghum bicolorOryza glaberrima48.0352.5488475forward
CNT30144939Sorghum bicolorMedicago truncatula21.0342.7185.1208forward
CNT30249355Sorghum bicolorAvena sativa47.4262.3790.62469forward
CNT30655883Sorghum bicolorTriticum dicoccoides54.174.9390.09535forward
CNT3059767Sorghum bicolorArabidopsis lyrata18.7126.0984.86185forward
CNT30265526Sorghum bicolorBrassica rapa47.3247.1383.97468forward
CNT30445850Sorghum bicolorSaccharum spontaneum78.1684.9591.85773forward
CNT30136973Sorghum bicolorLolium perenne23.5655.4889.27233forward
CNT30953Sorghum bicolorZea mays48.2350.4293.08477forward
CNT3041219Sorghum bicolorChlamydomonas reinhardtii22.3538.7790.5221forward
CNT30229012Sorghum bicolorAnanas comosus24.7729.5588.98245forward
CNT30219368Sorghum bicolorKalanchoe fedtschenkoi23.2639.3883.04230forward
CNT30208739Sorghum bicolorHelianthus annuus21.8454.6885.65216forward
CNT30689745Sorghum bicolorTriticum urartu48.0362.3490.11475forward
CNT30721658Sorghum bicolorTriticum spelta19.5146.5191.19193forward
CNT30340361Sorghum bicolorEragrostis tef15.2728.8791.39151forward
CNT30619808Sorghum bicolorCajanus cajan16.8928.0786.23167forward
CNT30597072Sorghum bicolorOryza meridionalis53.9973.5585.96534forward
CNT30371350Sorghum bicolorOryza glumipatula44.8954.1588.06444forward
CNT30482824Sorghum bicolorChara braunii29.9338.983.11296forward
CNT30430260Sorghum bicolorPapaver somniferum18.431.2786.26182forward
CNT3024728Sorghum bicolorPopulus trichocarpa27.233.1386.25269forward
CNT30104125Sorghum bicolorOryza rufipogon55.1141.2687.89545forward
CNT30575848Sorghum bicolorOryza barthii34.6838.1590.09343forward
CNT30582828Sorghum bicolorEchinochloa crusgalli54.162.3591.96535forward
CNT30726259Sorghum bicolorLupinus angustifolius49.8559.4783.77493forward

Expression of CNT30361562

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MARITFGHHGGWLKGTIGDFSNGQLLVVGLLSRDHRSVET*

>peptide 2 (41 aa)
MRSNLWSMRENTSTTLVELEIMHTARCTFARSPPGTTLGGW*

>peptide 3 (73 aa)
MPHLKPVGHQSTNWMVRLVLMVATAAFTSLGTTSPRYMRQQAMYLPWRGSHLAIMEDGSKALLVISATDSCSW*

Sequence

>CNT30361562
TCTCAGAGGTCAAGAGTCAAGAAGCAACAATATAGACAACCATATAACGGCTCTTAATAACCCAACAAGTCGCAAAGCAGGGAATTAACCACAAGTCTTA
CAACATCGGGTGTTGTAAACCACACAATGACAGATAAGTTCGGAACCCACAGACAAACAAGATAGTACGAGCCACTCAGGGCAGATCACGGGATAATTGC
AGCAAATAGGCCCGACGCTGTAGAACCAGAAAGCTTCTAGTACTCGTCGCCCTCGTCACCATCCTCACCCTCGTCGTACTCAGCGCCAACCTCCTCATAG
TCCTTCTCAAGCGCAGCCAGGTCCTCACGGGCCTCAGAGAACTCACCCTCCTCCATACCCTCACCAACGTACCAGTGCACGAAGGCACGCTTGGCGTACA
TGAGGTCAAACTTGTGGTCGATGCGGGAGAACACCTCCACAACGCTGGTGGAGTTGGAGATCATGCACACGGCACGCTGCACCTTTGCGAGGTCACCGCC
GGGCACCACACTGGGTGGCTGGTAGTTGATGCCACACTTGAAGCCAGTCGGGCACCAGTCCACGAACTGGATGGTGCGCTTGGTCTTGATGGTGGCCACA
GCGGCATTCACATCCTTGGGGACCACGTCACCACGGTACATGAGGCAGCAGGCCATGTACTTGCCATGGCGAGGATCACATTTGGCCATCATGGAGGATG
GCTCAAAGGCACTATTGGTGATTTCAGCAACGGACAGCTGCTCGTGGTAGGCCTTCTCAGCCGAGATCACAGGAGCGTAGAGACCTGAGGGGATGGGTAC
ACAGTGAACCCAAGCTTGGACTTCTTGCCATAATCAACAGACAGACGCTCCAAGAGGAGGGAACCAAGTCCAGAGCCCGTTCCTCCACCAACAGCATTGA
AGACAAGGAAACCCTGGAGACCAGTGCAGTTGTCTGCAAGCTTCCTGATGCGATCAAGGCACAGGTCAACAAACACAGCACGGGGGACA