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Detailed information on CNT3071007


BLAST search results

BLAST vs Swiss-Prot:
sp|P33632|TBB3_ANEPH, E-value = 2e-21

BLAST vs NONCODE:
NONGMAT000219, E-value = 2e-33

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Quercus suberOryza sativa57.3441.9883.28293forward
CNT30677979Quercus suberSetaria viridis55.5829.9383.1284forward
CNT30522101Quercus suberSetaria italica55.5826.7983.1284forward
CNT30533600Quercus suberEucalyptus grandis63.887.1786.5326forward
CNT30547493Quercus suberIpomoea triloba73.7833.7285.68377forward
CNT30517711Quercus suberJuglans regia27.5926.682.98141forward
CNT30371538Quercus suberArabidopsis thaliana53.2357.2686.76272forward
CNT30618173Quercus suberSesamum indicum50.4932.5383.33258forward
CNT30729860Quercus suberCorchorus capsularis72.640.1188.14371forward
CNT30379228Quercus suberManihot esculenta74.1743.4685.75379forward
CNT30507454Quercus suberNicotiana attenuata62.8249.4684.11321forward
CNT30709081Quercus suberGlycine max74.3650.5383.16380forward
CNT3098615Quercus suberSolanum tuberosum53.0352.8383.76271forward
CNT30177039Quercus suberSecale cereale73.9727.8484.66378forward
CNT30294619Quercus suberTriticum aestivum73.9744.8982.54378forward
CNT30224141Quercus suberHordeum vulgare44.0333.0984225forward
CNT30391405Quercus suberTriticum turgidum73.9749.882.54378forward
CNT3085161Quercus suberVigna radiata62.2345.3686.16318forward
CNT30555417Quercus suberOryza glaberrima73.9746.8481.75378forward
CNT30144688Quercus suberMedicago truncatula35.0350.4286.59179forward
CNT30439881Quercus suberAegilops tauschii75.9350.5982.99388forward
CNT30247087Quercus suberAvena sativa49.3234.4386.51252forward
CNT30655883Quercus suberTriticum dicoccoides75.9354.3483.76388forward
CNT3075301Quercus suberBrassica juncea34.8333.5288.2178forward
CNT30265526Quercus suberBrassica rapa64.7733.3385.8331forward
CNT30445643Quercus suberSaccharum spontaneum73.9742.6282.01378forward
CNT30136973Quercus suberLolium perenne37.9646.1986.6194forward
CNT30953Quercus suberZea mays73.9739.9683.33378forward
CNT3041219Quercus suberChlamydomonas reinhardtii27.424.5685140forward
CNT30229012Quercus suberAnanas comosus27.9817.2584.62143forward
CNT30219368Quercus suberKalanchoe fedtschenkoi43.8438.3682.59224forward
CNT30208739Quercus suberHelianthus annuus41.4953.6784.91212forward
CNT30689745Quercus suberTriticum urartu56.5637.9383.74289forward
CNT30721351Quercus suberTriticum spelta30.9223.8783.54158forward
CNT30340361Quercus suberEragrostis tef20.1619.6983.5103forward
CNT30362155Quercus suberSorghum bicolor73.9734.6583.07378forward
CNT30597072Quercus suberOryza meridionalis67.1247.2582.22343forward
CNT30360524Quercus suberLactuca sativa39.7331.6783.25203forward
CNT30371316Quercus suberOryza glumipatula73.9732.0381.48378forward
CNT30570163Quercus suberVitis vinifera74.1745.7785.49379forward
CNT3052700Quercus suberAmborella trichopoda26.8143.3586.13137forward
CNT30106557Quercus suberOryza longistaminata23.2955.6181.51119forward
CNT3022486Quercus suberPopulus trichocarpa24.0719.7190.24123forward
CNT30148523Quercus suberBrachypodium distachyon44.2335.0484.51226forward
CNT30104256Quercus suberOryza rufipogon73.9729.0881.75378forward
CNT30575848Quercus suberOryza barthii62.2335.3782.08318forward
CNT30582828Quercus suberEchinochloa crusgalli70.8442.1983.43362forward
CNT30117950Quercus suberOryza nivara73.9745.681.75378forward
CNT30593783Quercus suberEragrostis curvula33.2732.281.76170forward
CNT30558847Quercus suberPanicum hallii55.5838.4885.21284forward
CNT30724701Quercus suberLupinus angustifolius73.1933.1384.49374forward

Expression of CNT3071007

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MVATAAFTSLGTTSPRYIKQQAMYFPWRGSHFAIIEEGSNALLVISATESCS*

>peptide 2 (44 aa)
MKWILGIGRKHEMDPGVWNQVGLELSHIDIQGSIKPQRGSQGRDH

>peptide 3 (34 aa)
MKWILGYGTKLVWNSVTSTFKAPSNLKEAVKDEIT

>peptide 4 (28 aa)
MEPSWSGTQSHRHSRLHQTSKRQSRTRSP

Sequence

>CNT3071007
GGTCAATCCTGGAGAACACCTCAGCAACACTGGTTGAGTTGGAGATCATGCAAACAGCCCTCTGAACTTTAGCAAGATCGCCTCCGGGAACAACAGTCGG
CGGTTGGTAATTGATACCGCACTTAAACCCGGTAGGGCACCAATCAACAAACTGGATTGTGCGCTTGGTCTTGATGGTGGCCACAGCCGCATTCACATCC
TTGGGCACGACATCGCCGCGGTACATCAAACAGCAAGCCATGTATTTCCCATGGCGAGGGTCACATTTTGCCATCATAGAAGAGGGCTCGAACGCACTAT
TGGTAATCTCAGCCACTGAAAGTTGCTCGTGATACGCCTTCTCAGCTGAGATGACAGGAGCATAGGAAGAAAGCATGAAATGGATCCTGGGCATAGGAAG
AAAGCATGAAATGGATCCTGGGGTATGGAACCAAGTTGGTCTGGAACTCAGTCACATCGACATTCAAGGCTCCATCAAACCTCAAAGAGGCAGTCAAGGA
CGAGATCACCT