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Detailed information on CNT30249355


BLAST search results

BLAST vs Swiss-Prot:
sp|P33629|TBA_PRUDU, E-value = 2e-103

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692533Avena sativaOryza sativa41.7644.9990.13314forward
CNT30677760Avena sativaSetaria viridis58.7848.7393.21442forward
CNT30522101Avena sativaSetaria italica61.8443.8793.12465forward
CNT30547493Avena sativaIpomoea triloba59.7140.1689.09449forward
CNT30618173Avena sativaSesamum indicum35.6433.886.94268forward
CNT30403515Avena sativaBeta vulgaris8.2424.1295.1662forward
CNT30504799Avena sativaNicotiana attenuata32.7162.9286.18246forward
CNT30712730Avena sativaGlycine max48.9471.8885.05368forward
CNT30224141Avena sativaHordeum vulgare55.0560.8892.27414forward
CNT30555352Avena sativaOryza glaberrima57.7148.0189.63434forward
CNT30265526Avena sativaBrassica rapa65.0349.2484.66489forward
CNT30445850Avena sativaSaccharum spontaneum62.3751.5492.11469forward
CNT30953Avena sativaZea mays59.5747.3691.07448forward
CNT3041219Avena sativaChlamydomonas reinhardtii29.1238.4290.87219forward
CNT30229012Avena sativaAnanas comosus31.9128.9588.33240forward
CNT30208739Avena sativaHelianthus annuus28.7254.6887.04216forward
CNT30361562Avena sativaSorghum bicolor62.3747.4290.62469forward
CNT30620135Avena sativaCajanus cajan10.3724.9289.7478forward
CNT30371350Avena sativaOryza glumipatula51.4647.289.41387forward
CNT30482824Avena sativaChara braunii33.9133.5183.53255forward
CNT3024728Avena sativaPopulus trichocarpa36.333.6288.28273forward
CNT30104125Avena sativaOryza rufipogon61.5735.0589.2463forward
CNT30578324Avena sativaOryza barthii47.8736.6688.61360forward
CNT30582828Avena sativaEchinochloa crusgalli62.3754.6691.04469forward

Expression of CNT30249355

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MPHLKPVGHQSTNWMVRLVLMVATAAFTSLGTTSPRYMRQQAMYLPWRGSHLAIMDEGSKALLVISDTDSCSWKP*

>peptide 2 (43 aa)
ARYLFHGSINEAVQHRHRKRSGLTTQDPDTSSKNRTAQQHTKR*

>peptide 3 (56 aa)
MPSPTYQCTKARLAYMRSNLWSMREKTSTTLVELEIMQTALCTLARSPPGTTVGGW*

Sequence

>CNT30249355
GCGAGATACTTGTTCCACGGAAGTATTAATGAAGCAGTTCAACACCGACACAGAAAGCGCTCAGGCTTAACAACTCAAGACCCAGACACAAGTTCCAAGA
ACAGGACAGCACAGCAACACACTAAAAGATAGGCAGAGGAGTAGATTCATCCTCTGACGAGCAGATCAGTAGTCATCCTCATCCTCACCCTCCTCATCGT
CACCGCCCTCAGCGCCGACCTCCTCGTAGTCCTTCTCCAGGGCAGCAAGGTCCTCACGGGCCTCAGAGAACTCGCCCTCCTCCATGCCCTCACCGACATA
CCAGTGCACGAAGGCACGCTTGGCATACATGAGGTCGAACTTGTGGTCAATGCGGGAGAAGACCTCGACAACGCTGGTGGAGTTGGAGATCATGCAGACC
GCCCTCTGCACCTTGGCAAGGTCACCGCCAGGCACCACAGTGGGTGGCTGGTAGTTGATGCCGCACTTGAAGCCCGTGGGGCACCAGTCCACAAACTGGA
TGGTGCGCTTGGTCTTGATGGTAGCCACAGCAGCGTTCACGTCCTTGGGCACCACATCACCACGGTACATGAGGCAGCAGGCCATGTACTTGCCGTGGCG
GGGGTCACACTTGGCCATCATGGATGAAGGCTCAAAGGCGCTGTTGGTGATCTCAGATACAGACAGCTGCTCGTGGAAGCCCTGAAGGCCAGTGCAGTTG
TCAGCGAGCTTGCGGATGCGGTCCAGGCAGAGATCCACAATCTCCTTGCCGA