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Detailed information on CNT30430260


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677932Papaver somniferumSetaria viridis35.427.6983.98206forward
CNT30521842Papaver somniferumSetaria italica35.422.3283.98206forward
CNT30640127Papaver somniferumNymphaea colorata32.8223.9389.53191forward
CNT30532757Papaver somniferumEucalyptus grandis28.3537.586.06165forward
CNT30547493Papaver somniferumIpomoea triloba35.9118.6988.04209forward
CNT30517711Papaver somniferumJuglans regia37.9741.790.05221forward
CNT30702815Papaver somniferumQuercus lobata28.1844.5787.8164forward
CNT30371538Papaver somniferumArabidopsis thaliana35.914488.52209forward
CNT30618174Papaver somniferumSesamum indicum23.5431.7185.4137forward
CNT3021397Papaver somniferumCitrullus lanatus21.6519.0387.3126forward
CNT30727923Papaver somniferumCorchorus capsularis3919.1789.43227forward
CNT30379228Papaver somniferumManihot esculenta40.5527.0688.14236forward
CNT30504800Papaver somniferumNicotiana attenuata35.9147.2987.08209forward
CNT30709049Papaver somniferumGlycine max35.9130.1687.08209forward
CNT30177039Papaver somniferumSecale cereale37.2915.9886.64217forward
CNT30284381Papaver somniferumTriticum aestivum37.2928.487.56217forward
CNT30224654Papaver somniferumHordeum vulgare35.413.4982.52206forward
CNT30391523Papaver somniferumTriticum turgidum33.3326.3285.05194forward
CNT3086234Papaver somniferumVigna radiata30.7633.7787.71179forward
CNT30553152Papaver somniferumOryza glaberrima28.8724.2882.14168forward
CNT30144939Papaver somniferumMedicago truncatula39.8647.6486.21232forward
CNT30247087Papaver somniferumAvena sativa43.9934.9785.94256forward
CNT30655738Papaver somniferumTriticum dicoccoides37.2932.2487.56217forward
CNT3059767Papaver somniferumArabidopsis lyrata33.8527.7989.34197forward
CNT30265526Papaver somniferumBrassica rapa36.4321.3589.15212forward
CNT30445850Papaver somniferumSaccharum spontaneum37.2923.8585.25217forward
CNT30953Papaver somniferumZea mays33.3320.5185.05194forward
CNT3041114Papaver somniferumChlamydomonas reinhardtii26.1221.6282.24152forward
CNT30229012Papaver somniferumAnanas comosus37.9726.6685.97221forward
CNT30219368Papaver somniferumKalanchoe fedtschenkoi21.9921.9285.94128forward
CNT30204030Papaver somniferumHelianthus annuus33.8547.4789.85197forward
CNT30624589Papaver somniferumDaucus carota23.0227.0290.3134forward
CNT30689745Papaver somniferumTriticum urartu37.2928.4887.1217forward
CNT30720138Papaver somniferumTriticum spelta14.0923.8491.4682forward
CNT30361562Papaver somniferumSorghum bicolor31.2718.486.26182forward
CNT30597037Papaver somniferumOryza meridionalis30.7634.1679.89179forward
CNT30358630Papaver somniferumLactuca sativa24.5736.4884.62143forward
CNT30371350Papaver somniferumOryza glumipatula35.425.1281.07206forward
CNT30482824Papaver somniferumChara braunii25.0919.1984.25146forward
CNT30570286Papaver somniferumVitis vinifera34.0240.2488.89198forward
CNT3022486Papaver somniferumPopulus trichocarpa43.8140.8787.84255forward
CNT30100887Papaver somniferumOryza rufipogon32.8224.8182.72191forward
CNT30582828Papaver somniferumEchinochloa crusgalli36.2524.5985.31211forward
CNT30333509Papaver somniferumCynara cardunculus27.1528.7383.54158forward
CNT30724701Papaver somniferumLupinus angustifolius3920.1190.31227forward

Expression of CNT30430260

Peptides detected in this lncRNA

>peptide 1 (28 aa)
MREKTSATLVELEIMQTALWTLARSFSFF

Sequence

>CNT30430260
TACAACTAATCTTGCCACAGCACAACAATAACACCTATTGAAGTTACCGCTACACACTCACACTCTAATGCCTGGGCATCTTAAAGTTAGTTTTTCAGAG
TAGGCTGAATGCAAGTTGCCAAAAGCCATTCATCATTTCCAGAAACTTTCCTAGTAAACTACATCCAAATACCAATAATCCACACCACATAACCATGATT
ATTAAGGAAACTTAGAAACATACAAGTCTTTCATCACCATCAAACAGGAACAGAAAACAGCAAAGAACTAGTACAGGCTTGTTGTAAATCATTATAACTT
CTTCTAAAGCTCAGTACTCATCTCCATCATCTCCATCGTCTCCCTCAGCAGACTCGGCACCAACCTCCTCGTAATCCTTCTCAAGAGCAGCAAGATCCTC
ACGAGCTTCAGAGAATTCTCCTTCTTCCATACCCTCACCGACATACCAGTGAACAAAGGCACGTTTGGCATACATAAGATCAAATTTGTGGTCAATGCGA
GAGAAGACCTCCGCAACACTGGTGGAGTTGGAGATCATGCAAACAGCTCTCTGGACCTTGGCAAGGTCCTTCTCCTTCTTCC