Detailed information on CNT30677760


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 1e-98

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371538Setaria viridisArabidopsis thaliana45.8787.5882.69416forward
CNT30712730Setaria viridisGlycine max40.5771.8884.78368forward
CNT30177039Setaria viridisSecale cereale53.4735.7189.07485forward
CNT30295550Setaria viridisTriticum aestivum53.4769.7891.75485forward
CNT30391523Setaria viridisTriticum turgidum53.0365.2691.48481forward
CNT30555352Setaria viridisOryza glaberrima53.2553.4390.48483forward
CNT30249355Setaria viridisAvena sativa48.7358.7893.21442forward
CNT30655883Setaria viridisTriticum dicoccoides53.4767.9389.9485forward
CNT30265526Setaria viridisBrassica rapa45.8741.8984.62416forward
CNT30445850Setaria viridisSaccharum spontaneum53.4753.392.99485forward
CNT30689745Setaria viridisTriticum urartu53.1463.2590.04482forward
CNT30361562Setaria viridisSorghum bicolor53.4749.0492.37485forward
CNT30371350Setaria viridisOryza glumipatula48.0753.1789.91436forward
CNT30104125Setaria viridisOryza rufipogon53.4736.7190.52485forward
CNT30582828Setaria viridisEchinochloa crusgalli53.5856.6492.18486forward

Expression of CNT30677760

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MAGVALGHHGGRLKGAVGVVTTGKVIGSILLATDELLRVEELAVSTSPHLINHSGLKAVELPARVSDLYTGLADVDRDALPHGVVGRVVRRRRRRR*

>peptide 2 (37 aa)
MWIEMHSLMVSSEGWCGGDGGGGREWEDGESFESRERR

>peptide 3 (41 aa)
MRSNLWSMRENTSTTLVELEIMHTARCTLARSPPGTTLGGW*

>peptide 4 (47 aa)
RCCKRHTTTDNSSNRHTDTQQDKIGATRADHRITAAHRPDTAAGSIV*

>peptide 5 (64 aa)
MPHLNPVGHQSTNWMVRLVLMVATAALTSLGTTSPRYMRQQAMYLPWRGSHLAIMEDGSKALLV*

Sequence

>CNT30677760
TAAGATGTTGTAAACGACATACGACGACAGATAACAGTTCAAACCGACACACCGACACACAACAAGATAAGATAGGAGCCACTCGGGCAGATCATAGGAT
AACCGCGGCACACAGGCCTGACACAGCAGCAGGAAGCATCGTCTAGTACTCGTCACCCTCGTCTCCTTCCTCGCCCTCGTCGAACTCAGCGCCGACCTCC
TCGTAGTCCTTCTCGAGCGCAGCCAGGTCCTCACGGGCCTCAGAGAACTCGCCCTCCTCCATGCCCTCACCCACGTACCAGTGAACGAAGGCACGCTTGG
CGTACATGAGGTCAAACTTGTGGTCGATGCGGGAGAACACCTCGACCACGCTGGTGGAGTTGGAGATCATGCACACGGCACGCTGCACCTTGGCCAGGTC
ACCGCCAGGCACCACGCTGGGGGGCTGGTAGTTGATGCCGCACTTGAACCCAGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTGGTCTTGATGGTG
GCAACAGCAGCGTTGACGTCCTTGGGCACCACATCACCACGGTACATGAGGCAGCAAGCCATGTACTTGCCATGGCGGGGGTCGCACTTGGCCATCATGG
AGGACGGCTCAAAGGCGCTGTTGGTGTAGTGACCACGGGCAAAGTTATTGGCAGCATCCTCCTTGCCACTGATGAGCTGCTCAGGGTGGAAGAGCTGGCG
GTAAGTACCAGTCCTCACCTCATCAATCACAGTGGGCTCAAGGCAGTAGAGCTCCCAGCACGCGTTTCCGACCTGTATACCGGCCTGGCCGATGTGGATC
GAGATGCACTCCCTCATGGTGTCGTCGGAAGGGTGGTGCGGCGGCGACGGCGGCGGCGGTAGGGAATGGGAGGACGGGGAAAGCTTTGAGTCGCGAGAGA
GGCGAGT